Sequence details NCBI ID: XM_004843112.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdh5
Gene Name cadherin 5, type 2 (vascular endothelium), transcript variant X2
Entrez Gene ID 101706580

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDH5 ENSCPOG00000013426 (Guinea pig)

Gene Details

cadherin 5, type 2 (vascular endothelium)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012089, Guinea pig)

Protein Percentage 86.83%
CDS Percentage 89.05%
Ka/Ks Ratio 0.17915 (Ka = 0.064, Ks = 0.357)

CDH5 ENSG00000179776 (Human)

Gene Details

cadherin 5, type 2 (vascular endothelium)

External Links

Gene Match (Ensembl Protein ID: ENSP00000344115, Human)

Protein Percentage 76.16%
CDS Percentage 81.87%
Ka/Ks Ratio 0.24255 (Ka = 0.1408, Ks = 0.5803)

Cdh5 ENSMUSG00000031871 (Mouse)

Gene Details

cadherin 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034339, Mouse)

Protein Percentage 75.71%
CDS Percentage 79.22%
Ka/Ks Ratio 0.20733 (Ka = 0.1577, Ks = 0.7606)

Cdh5 ENSRNOG00000013324 (Rat)

Gene Details

cadherin 5 (Cdh5), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000017983, Rat)

Protein Percentage 77.93%
CDS Percentage 79.98%
Ka/Ks Ratio 0.17697 (Ka = 0.1412, Ks = 0.7977)

Genome Location

Sequence Coding sequence

Length: 2349 bp    Location: 20068014..20031732   Strand: -
Raw sequence   
>XM_004843112.1
ATGCTGACCACTGCTTTAGGCACCTACATGGGCCTGTTGGTGGCAGCATCAGTGGCAGGCTGTGACCCTACCCAACTGGACACCCTCAGCCTCCCATGCATCCACAGGCGCCAGAAGAGAGACTGGATTTGGAACCAGATGCATGTTGATGAAGAGAAAACTGATCCTTTACCCTATTATGTGGGCAAGCTCAAGTCGAGTGTGAACCGCAAGAACGCCACGTATGTGCTCAAAGGAGAGGCCGCTAACAGCATTTTCCAGGTCAATGCAGACACAGGGGATGTGTATGCTTTTGCGAGGCTCGACCGGGAGAAGGTCTCCGAGTACTCCCTCGTTGCCCTCATTGTGGACAAAGACACTAACAAAAACCTGGAGCCTCCTTCCAACTTCACTATCAAAGTTCATGACATAAATGACAACTGGCCTGTGTTCACCCATCGGTTGTTCAATGCCTCGGTGCTCGAGATGTCACCTGGGGGGACCTCAGTCATGCGTTTAACAGCAGTGGATGCAGATGACCCCACTGTGGCAGACCACGCCACTGTTATGTACCAAATCCTGAAGGGGGGTGAGAATTTTGCCATCGACAATTCAGGATTAATTTCCACTGCAAAGCAAAACTTGGATCGAGAGGTACAGGCCAGCTATGAGATCGTGGTGGAAGCACGAGATGCCGAGGGCCTCCAAGGAGAATCAGGCACAGCCACCGTGCTGATCACTCTGCAAGATGTCAATGACAACTTCCCCATCTTCGCTCAGCCCATGTACACATTTGTGGTGCCTGAAGACATCCGCGTGGGCAGCTCTGTAGGTTCTCTTTTTGTTGAGGACCCAGATGAGCCTCAGAACCGGAAGACCAAGTTTGACATCGTGCAGGGCGAGTACAGAGACACCTTCACTATCGACACGGATCCTACCCGCAATGAGGGCATCATCAAGCCCATGAAGCCCCTGGACTATGAGCTCATCCAAAAATACTCATTCGTCGTCGAGGCCACAGACCCTACTATCAACCTTGGATACCTGAGAGGCATCACGGGCAAAAACAAAGCCCGTGTCGTCATCAATATCTTGGATGTGGATGAGCCTCCTGTCTTCCAGAAGCGCTTCTATCACTTCCTGTTGAACGAGAACCAGAAGAAAAATCTAATAGGTTCAGTGCTAGCCAAGGACCCTGACAAGGCTGGGCGTAATATTGGATACTCCATCCGCAAGACTAGTGACAAGGGCCAATTCTTCCGAATAACCAAGCAGGGTGACATTCACTGTGAGAAAGAACTGGACAGAGAAATCTACCCCTGGCACAACTTGACTGTGGAGGCCAATGAGCTAGATCCTAATGGGAACCCCACAGGCAAAGAATCTATTGTCCAGGTGCACATTGAAGTTTTGGATGAGAATGACAATGCCCCAGAGTTTGCTCAACCCTATGAGCCCAAAGTGTGTGAAAATGCAGCCCAGGGCAAGCTGGTTGTGCAGATCTCTGCAGTAGACAAGGACATAACGCCACAAAATGTCAAGTTCAAGTTTGCCCTGGGGACTGATGACAGCAACTTCACCCTCATAGACAATCACGATAACACAGCCAACATCACAGTCAAGTATGGGCCGTTTGACCGGGAGCATGCCAAGTTCTACTACCTGCCTGTGCTCATCTCGGACAACGGGTCCCCAAGCCTGACGGGTACCAGCACGCTGACCGTGGTTGTGTGCAAGTGCAACCAGCAGGGCACGTTCACCTTCTGTGAGGAGGCAGTCGCCCAGGCAGGCGTCAGCATCCAGGCACTAGTGGCCATCTTCCTCTGCATCCTCACCATCACAGTGATCACCCTGCTCTTCTTCCTGCGGAGGCGGCTGCGGAAGCAGGCCCGCGCCCACGGCAAGGGCGTGACCGAGATCCACGAGCAGCTGGTCACCTACGACGAGGAGGGCGGCGGCGAGATGGACACCACCTGCTACGACGTGTCCGTGCTCAACTCGGCGCGGTCGGGCGCGGCCAAGCCCTTGCGGTCCGTGTTGGACGCGCGGCAGCCCATCTACGCCAAGGCACAGAAGCCACCGCGGGTGGCGCCAGGGGTGATGCCCGGAGTGCACGGCGGGCCCGGGGAGATGGCCGCAATGATCGAGGTGAAGAAGGACGAGGCAGACCACGACGGCGGCGGCCCGCCCTATGATACCCTGCATATCTACGACTACGAGGGTTCTGAGTCCATCGCCGAGTCGCTCAGCTCCCTAGGCACCGATTCGACCAACTCTGACATCGATTACGACTTTCTCAACGACTGGGGGCCCAGGTTCAAGATGCTGGCCGAGCTGTACTCCAACCCCTGGGATGATCTGGTATATTAG

Related Sequences

XP_004843169.1 Protein

Cdh5 PREDICTED: cadherin-5 isoform X2 [Heterocephalus glaber]

Length: 782 aa      View alignments
>XP_004843169.1
MLTTALGTYMGLLVAASVAGCDPTQLDTLSLPCIHRRQKRDWIWNQMHVDEEKTDPLPYYVGKLKSSVNRKNATYVLKGEAANSIFQVNADTGDVYAFARLDREKVSEYSLVALIVDKDTNKNLEPPSNFTIKVHDINDNWPVFTHRLFNASVLEMSPGGTSVMRLTAVDADDPTVADHATVMYQILKGGENFAIDNSGLISTAKQNLDREVQASYEIVVEARDAEGLQGESGTATVLITLQDVNDNFPIFAQPMYTFVVPEDIRVGSSVGSLFVEDPDEPQNRKTKFDIVQGEYRDTFTIDTDPTRNEGIIKPMKPLDYELIQKYSFVVEATDPTINLGYLRGITGKNKARVVINILDVDEPPVFQKRFYHFLLNENQKKNLIGSVLAKDPDKAGRNIGYSIRKTSDKGQFFRITKQGDIHCEKELDREIYPWHNLTVEANELDPNGNPTGKESIVQVHIEVLDENDNAPEFAQPYEPKVCENAAQGKLVVQISAVDKDITPQNVKFKFALGTDDSNFTLIDNHDNTANITVKYGPFDREHAKFYYLPVLISDNGSPSLTGTSTLTVVVCKCNQQGTFTFCEEAVAQAGVSIQALVAIFLCILTITVITLLFFLRRRLRKQARAHGKGVTEIHEQLVTYDEEGGGEMDTTCYDVSVLNSARSGAAKPLRSVLDARQPIYAKAQKPPRVAPGVMPGVHGGPGEMAAMIEVKKDEADHDGGGPPYDTLHIYDYEGSESIAESLSSLGTDSTNSDIDYDFLNDWGPRFKMLAELYSNPWDDLVY