Details from NCBI annotation

Gene Symbol Vamp1
Gene Name vesicle-associated membrane protein 1 (synaptobrevin 1), transcript variant X1
Entrez Gene ID 101701965

Database interlinks

Part of NW_004624860.1 (Scaffold)

For more information consult the page for NW_004624860.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VAMP1 ENSCPOG00000008473 (Guinea pig)

Gene Details

vesicle-associated membrane protein 1 (synaptobrevin 1)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007617, Guinea pig)

Protein Percentage 82.2%
CDS Percentage 79.94%
Ka/Ks Ratio 0.22507 (Ka = 0.1478, Ks = 0.6567)

VAMP1 ENSG00000139190 (Human)

Gene Details

vesicle-associated membrane protein 1 (synaptobrevin 1)

External Links

Gene Match (Ensembl Protein ID: ENSP00000379602, Human)

Protein Percentage 81.36%
CDS Percentage 79.38%
Ka/Ks Ratio 0.2305 (Ka = 0.1534, Ks = 0.6656)

Vamp1 ENSMUSG00000030337 (Mouse)

Gene Details

vesicle-associated membrane protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000032487, Mouse)

Protein Percentage 83.05%
CDS Percentage 78.25%
Ka/Ks Ratio 0.16033 (Ka = 0.1424, Ks = 0.8879)

Vamp1 ENSRNOG00000019219 (Rat)

Gene Details

vesicle-associated membrane protein 1 (Vamp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000025081, Rat)

Protein Percentage 79.49%
CDS Percentage 78.63%
Ka/Ks Ratio 0.22544 (Ka = 0.1528, Ks = 0.6777)

Genome Location

Sequence Coding sequence

Length: 399 bp    Location: 3219381..3215396   Strand: -
>XM_004869391.1
ATGTCTGCTCCAGCTCAGCCACCTGCTGAAGGGACAGAAGGGGCTGCCCCTGGGGGGGGTCCTCCTGGCCTCCCTCCCAACATGACCAGCAACCGCCGACTACAGCAGACGCAGGCGCAGGTGGAGGAGGTGGTGGACATCATGCGAGTGAATGTGGACAAGGTCCTGGAGAGGGACCAGAAGCTGTCAGAGCTGGATGACCGAGCTGATGCCTTGCAGGCGGGAGCCTCTCAGTTTGAGAGTAGTGCTGCCAAGCTAAAGAGAAAGTATTGGTGGAAAAACTGTAAGGTGAATGTCCTTGTCCTTCTCCTTCTTTTCCTCTCCAGCCCTTCCCTCCAAGGGTGCCGGGTCTCTGTCCTGCAGGGACCTCTTGGGAGGAAATCTGAGTGCCTGCTCTGA

Related Sequences

XP_004869448.1 Protein

Vamp1 PREDICTED: vesicle-associated membrane protein 1 isoform X1 [Heterocephalus glaber]

Length: 132 aa      View alignments
>XP_004869448.1
MSAPAQPPAEGTEGAAPGGGPPGLPPNMTSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKVNVLVLLLLFLSSPSLQGCRVSVLQGPLGRKSECLL