Details from NCBI annotation

Gene Symbol Map1lc3a
Gene Name microtubule-associated protein 1 light chain 3 alpha, transcript variant X2
Entrez Gene ID 101710069

Database interlinks

Part of NW_004624842.1 (Scaffold)

For more information consult the page for NW_004624842.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MAP1LC3A ENSCPOG00000013802 (Guinea pig)

Gene Details

microtubule-associated protein 1 light chain 3 alpha

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012436, Guinea pig)

Protein Percentage 99.17%
CDS Percentage 96.42%
Ka/Ks Ratio 0.01021 (Ka = 0.0032, Ks = 0.3154)

MAP1LC3A ENSG00000101460 (Human)

Gene Details

microtubule-associated protein 1 light chain 3 alpha

External Links

Gene Match (Ensembl Protein ID: ENSP00000363970, Human)

Protein Percentage 90.91%
CDS Percentage 85.95%
Ka/Ks Ratio 0.05309 (Ka = 0.0699, Ks = 1.3171)

Map1lc3a ENSMUSG00000027602 (Mouse)

Gene Details

microtubule-associated protein 1 light chain 3 alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029128, Mouse)

Protein Percentage 99.17%
CDS Percentage 91.74%
Ka/Ks Ratio 0.00335 (Ka = 0.0032, Ks = 0.9594)

Map1lc3a ENSRNOG00000025443 (Rat)

Gene Details

microtubule-associated protein 1 light chain 3 alpha (Map1lc3a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000032429, Rat)

Protein Percentage 99.17%
CDS Percentage 91.74%
Ka/Ks Ratio 0.00374 (Ka = 0.0033, Ks = 0.8773)

Genome Location

Sequence Coding sequence

Length: 366 bp    Location: 4802094..4800534   Strand: -
>XM_004867915.1
ATGCCCTCGGACCGGCCTTTCAAGCAGCGGCGGAGCTTCGCCGACCGCAGTAAGGAGGTGCAGCAGATCCGGGACCAGCACCCCAGCAAGATCCCGGTGATCATAGAACGCTACAAGGGTGAGAAGCAGCTCCCTGTCCTAGACAAGACCAAGTTCCTAGTCCCCGACCATGTCAACATGAGCGAGTTGGTCAAGATCATTCGGCGCCGCCTGCAGCTGAACCCCACGCAGGCCTTCTTCCTGCTGGTGAACCAGCACAGCATGGTGAGCGTGTCCACGCCCATCGCAGACATTTATGAGCAGGAGAAAGATGAGGATGGCTTCCTGTACATGGTCTACGCCTCCCAGGAGACCTTCGGCTTCTGA

Related Sequences

XP_004867972.1 Protein

Map1lc3a PREDICTED: microtubule-associated proteins 1A/1B light chain 3A isoform X2 [Heterocephalus glaber]

Length: 121 aa      View alignments
>XP_004867972.1
MPSDRPFKQRRSFADRSKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF