Sequence details NCBI ID: XM_004867201.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Scaf1
Gene Name SR-related CTD-associated factor 1
Entrez Gene ID 101707700

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCAF1 ENSCPOG00000019794 (Guinea pig)

Gene Details

SR-related CTD-associated factor 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016189, Guinea pig)

Protein Percentage 93.92%
CDS Percentage 88.82%
Ka/Ks Ratio 0.05785 (Ka = 0.0314, Ks = 0.5427)

SCAF1 ENSG00000126461 (Human)

Gene Details

SR-related CTD-associated factor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000353769, Human)

Protein Percentage 92.71%
CDS Percentage 88.99%
Ka/Ks Ratio 0.06479 (Ka = 0.0343, Ks = 0.5288)

Scaf1 ENSMUSG00000038406 (Mouse)

Gene Details

SR-related CTD-associated factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000082501, Mouse)

Protein Percentage 87.15%
CDS Percentage 81.49%
Ka/Ks Ratio 0.06955 (Ka = 0.0697, Ks = 1.0022)

Scaf1 ENSRNOG00000020499 (Rat)

Gene Details

SR-related CTD-associated factor 1 (Scaf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027801, Rat)

Protein Percentage 87.65%
CDS Percentage 81.88%
Ka/Ks Ratio 0.0693 (Ka = 0.067, Ks = 0.9671)

Genome Location

Sequence Coding sequence

Length: 3867 bp    Location: 4631810..4617209   Strand: -
Raw sequence   
>XM_004867201.1
ATGTACCTACCAAAGGTAACCATGGAGGAAGAAGATGAGTCTCGAGGGAAGACAGAGGAGTCAGGCGAGGACCGGGGTGATGGTCCGCCTGACAGAGACCCCACGCTTTCTTCTTCTGCCTTTATCCTGCGGGCCATTCAGCAGGCCATGGGAAGCTCCCTGCAGGCGGATCTGCCGAATGATAAAGATGGCTCTCGGTGTCATGGCCTTCAGTGGAGGCGCTGCCGGAGCCCACGGTCAGAGCCCTGTCCCCAGGAATCAGGGGGCGCTGACACAGCTACTGTGCTGGACATGGCTGCCGACAGCTTCCTTGCAGGGCTGGTGAGCGTCCTTGACCCCCCGGATACCTGGGTTCCCAGCCACCTGGATCTGCGGCCCGGCGAAACCGAGGACATGCTGGAGCTGGTGGCTGAGGTCCGAATCGGGGACAGGGATCCCATCCCTCTACCTGTGCCCAGCCTGCTGCCCCGTCTCAGGGCCTGGAGGACAGGCAAAACGGTTTCCCCGCAGTCTCACTCTTCTCCACCCACCTGTGCTCGCCACCTCCTCACCCTGGGCACGGGAGATGGGGGCCCCGCCCCACGCCCCGCGCCCTCCTCTGCCTCCTCCTCCCCCTCCCCTGCCCCCCGATTCGACATCTATGACCCCTTCCACCCCACCGACGAGGCCTACTCCCCACCCCCTGCTCCGGAGCAAAAGTACGACCCCTTTGAGCCCACGGGCTCCAACCCCAGCTCATCAGCCGGGACACCCTCGCCAGAGGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAAGGGCTGTCGCAGAGCATCAGCCGCATCTCGGAGACCCTGGCGGGTATCTACGATGACAACAGCCTGAGCCAGGACTTCCCAGGTGATGAGAGCCCGCGCCCGGACCCCCAGCCCCCCCAGCCCCCAGCCGCCTCTGGAACTCCGCCCCAGGCCGACTCCACCCGGGCCGAGGCAGCCACTCGCCGGCGCGTCTTCGTGGTGGGAGCCGAGGCAGAGGCGTGTCGGGAAGGCAAGGTCTCGGTGGAGGTGGTTACTGCCGGAGGTGCTGCTCTGCCAACGCCCCTGCTGCCACCTCCTGACTCGGAGATCGAGGAGGGAGAGATTGTGCAGCCGGAGGAGGAGCCGCGGGTGGCCCTGTCCCTGTTCCGGCCCGGCGGCAGAGCTGCTGCCCGGCCACCGCCTGCCTCGGCAGCCCCCGCGGCTCAGCCACTCCCGCAGCCGCCCGCGCCCCGGGCCCCGGAGGGCGATGACTTCCTGTCCCTGCACGCAGAGTCGGACGGGGAGGGCGCGCTGCAGGTGGACCTGGGGGACCCGGGCCCTGCCCCGCCCGCCGCCGACACGCACTGGGGCGGCCTGGACCTGCGCCGCAAGATCCTCACGCAGCGGCGGGAGCGGTACCGCCAGCGCTCGCCGTCCCCAGCCTCCGTTCCCGCCGCGGCCGCGGCCTCCGCAGCCACGGGCCCGCCCACGCGCAAGAAGTCCAGGCGGGAGCGCAAGCGCAGCGGCGGCGGGGAGCCCAAGGAGCCCACCTCGTCCTCATCGGGCGCCCAGCCCGCGCCGCCCGCCCCGGCTTCGCCCTGGGACTCCAAGAAACACCGCTCCCGTGACCACAAGCCTGCCTCCCACACCTCGTCGTCCGCCCGCCGCCGCTCCCGCTCCCGCTCCGGTTCCCGCTCTGCCCGCCGTCGCTCGCGCAGCTCCGACCGCCGCCGTGGGAGCAGCCGCAGGTCCCGGTCCCGGGAGAAGCGGCGGCGACGGCGGCGCTCGGCCTCCCCGCCCCCGGCCACCTCGTCGTCGTCGTCCTCCAGACGCGAGCGGCACCGCGGCAAACACCGGGACGGCGGCAGCAGCAAGAAGAAGAAGAAGCGGTCTCGGTCCCGGGGTGAGAAGCGACCGGGGGACGGGGGCGACAAGGCCCCGGTGCTGGGGCAGCAGCCCTCCGGCGCCTCTGCGGGTGGCGAGCGAGACAGCCGGCGCCGGGGCGCGGTGCCACCCTCCATTCAGGACCTCACAGACCACGACCTCTTCGCCATCAAGCGGACCATCACGGTGGGCCGGCTTGACAAGTCGGACCCCCGAGGGCCCTCCCCGGTGCCTGCCGCCTCGCCGAAGCGTGAGGTCCTGTACGACTCGGAGGGACTGAGTGGGGAGGAGCGCGGGGGCAAGAGCAGCGAGAAGGACCGCCGGCGCTCAGGGGCTGCCTCCTCGTCCTCCTCCCGGGAGAAGGGGTCTCGTAGGAAGGCCCCGGATGGGGGGGACCGGGACCGGGACCGGGACAGGTCATCCAAGAAGGCCCGGCCTCCCAAGGAGTCAGCACCTCCCTCAGGGCCCCCGCCCAAGCCGCCCGTCAGCAGCGGCTCGGGCTCCTCTTCCTCCTCGTCGTCCTGCTCCTCCCGGAAGGTGAAGCTGCAGTCCAAGGTGGCCGTGCTCATCCGAGAGGGTGTCAGCAGCACCACCCCAGCCAAGGACTCTGCCTCTGCCGGCCTGGGCTCCATCGGAGTCAAATTCAGCCGCGACCGTGAGAGCCGCTCCCCCTTCCTGAAGCCTGACGAACGGGCTCCCGCGGAGGCCGCCAAAGCTACGCCGGGCAGCACCAAACCCAAAAAGACCAAGGTCAAGGCCAAGGCTGGGGCCAAGAAAGCCAAGGGGACCAAGGGAAAGACCAAGCCATCTAAGACCAGGAAAAAGATCCGCAGTGGGGGCAGCAGTGGGGCCAGCGGTGGCCCCGTGTCGCTGAAGAAGTCCAAGGCGGATAGCTGCAGCCAGGCAGCAGGGGCCAAGGGGGCTGAGGAGACTTCCTGGTCTGGGGAGGAACGGGCTGCCAAGGCCCCTAGTACCCCGCCCCCCAAGGCAGCCCCTCCGCCCCCGGCACTCACCCCAGATTCCCAGACGGTGGACAGTAGCTGCAAGACGCCTGAGGTCTCCTTCATGCCGGAGGAGGCCGCTGAGGAAGCTGGGATCCGAGGTGGGGCAGAGGAGGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCCTGCCACCACCACAGCCACCAGCACGGCTCCAGCTGCCCCGAGCGCTGCCCCCAGTGCGGGCTCCACAGCCGGAGATTCAGGGGCAGAGGACGGGCCTGCGACCCGAGCCTCCCAGCTGCCCACGCTGCCCCCGCCCATGCCCTGGAACCTGCCAGCTGGTGTGGACTGTACCACCAGTGGCGTCCTGGCCTTGACTGCACTTCTCTTCAAGATGGAAGAGGCCAATTTGGCCAGCCGAGCAAAAGCTCAGGAGCTGATCCAGGCCACCAACCAGATCCTCAGCCACAGGAAGCCACCCTCAGCCCTGGGGGTGACCCCAGCTCCTGTGCCCACCTCTCTGGGTCTGCCCCCTGGCCCTTCCAGCTACCTGCTTCCTGGCAGCCTCCCTCTGGGGGGCTGTGGCTCTACCCCGCCCACCCCCACTGGGCTGGCTGCTGCGTCTGACAAGAGAGAGGGGAGCAGTAGCTCTGAGGGACGTGGAGACACAGACAAGTATCTGAAGAAGCTGCACACGCAGGAGCGGGCAGTGGAGGAGGTGAAGCTGGCCATCAAGCCGTACTATCAGAAAAAGGACATCACCAAGGAGGAGTACAAGGACATCCTGAGGAAGGCCGTCCACAAGATCTGCCACAGCAAAAGTGGGGAGATCAACCCGGTGAAGGTGAGCAACCTGGTGCGGGCCTACGTCCAGCGCTACCGCTACTTCCGCAAGCACGGCCGCAAGCCAGGGGACCCCCCAGGACCACCCCGGCCACCCAAGGAGCCTGGGCCCCCCGACAAGGGCGGCCCGGGGCTGCCCCTGCCCCCTCTGTGA

Related Sequences

XP_004867258.1 Protein

Scaf1 PREDICTED: splicing factor, arginine/serine-rich 19 [Heterocephalus glaber]

Length: 1288 aa      View alignments
>XP_004867258.1
MYLPKVTMEEEDESRGKTEESGEDRGDGPPDRDPTLSSSAFILRAIQQAMGSSLQADLPNDKDGSRCHGLQWRRCRSPRSEPCPQESGGADTATVLDMAADSFLAGLVSVLDPPDTWVPSHLDLRPGETEDMLELVAEVRIGDRDPIPLPVPSLLPRLRAWRTGKTVSPQSHSSPPTCARHLLTLGTGDGGPAPRPAPSSASSSPSPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEEEGLSQSISRISETLAGIYDDNSLSQDFPGDESPRPDPQPPQPPAASGTPPQADSTRAEAATRRRVFVVGAEAEACREGKVSVEVVTAGGAALPTPLLPPPDSEIEEGEIVQPEEEPRVALSLFRPGGRAAARPPPASAAPAAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGDPGPAPPAADTHWGGLDLRRKILTQRRERYRQRSPSPASVPAAAAASAATGPPTRKKSRRERKRSGGGEPKEPTSSSSGAQPAPPAPASPWDSKKHRSRDHKPASHTSSSARRRSRSRSGSRSARRRSRSSDRRRGSSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGSSKKKKKRSRSRGEKRPGDGGDKAPVLGQQPSGASAGGERDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSDPRGPSPVPAASPKREVLYDSEGLSGEERGGKSSEKDRRRSGAASSSSSREKGSRRKAPDGGDRDRDRDRSSKKARPPKESAPPSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVLIREGVSSTTPAKDSASAGLGSIGVKFSRDRESRSPFLKPDERAPAEAAKATPGSTKPKKTKVKAKAGAKKAKGTKGKTKPSKTRKKIRSGGSSGASGGPVSLKKSKADSCSQAAGAKGAEETSWSGEERAAKAPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFMPEEAAEEAGIRGGAEEEEDEEEEEEEEQQQPATTTATSTAPAAPSAAPSAGSTAGDSGAEDGPATRASQLPTLPPPMPWNLPAGVDCTTSGVLALTALLFKMEEANLASRAKAQELIQATNQILSHRKPPSALGVTPAPVPTSLGLPPGPSSYLLPGSLPLGGCGSTPPTPTGLAAASDKREGSSSSEGRGDTDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINPVKVSNLVRAYVQRYRYFRKHGRKPGDPPGPPRPPKEPGPPDKGGPGLPLPPL