Sequence details NCBI ID: XM_004867106.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Gpatch1
Gene Name G patch domain containing 1, transcript variant X1
Entrez Gene ID 101726498

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GPATCH1 ENSCPOG00000024477 (Guinea pig)

Gene Details

G patch domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018310, Guinea pig)

Protein Percentage 84.81%
CDS Percentage 87.03%
Ka/Ks Ratio 0.28212 (Ka = 0.0902, Ks = 0.3196)

GPATCH1 ENSG00000076650 (Human)

Gene Details

G patch domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000170564, Human)

Protein Percentage 86.16%
CDS Percentage 86.95%
Ka/Ks Ratio 0.18589 (Ka = 0.0742, Ks = 0.399)

Gpatch1 ENSMUSG00000063808 (Mouse)

Gene Details

G patch domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000078632, Mouse)

Protein Percentage 83.57%
CDS Percentage 82.52%
Ka/Ks Ratio 0.14073 (Ka = 0.0932, Ks = 0.6623)

Gpatch1 ENSRNOG00000011584 (Rat)

Gene Details

G patch domain containing 1 (Gpatch1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000015791, Rat)

Protein Percentage 83.46%
CDS Percentage 82.7%
Ka/Ks Ratio 0.14901 (Ka = 0.0942, Ks = 0.6322)

Genome Location

Sequence Coding sequence

Length: 2790 bp    Location: 7079461..7042766   Strand: -
Raw sequence   
>XM_004867106.1
ATGGCGGCGCCGCACAGTGACAGTGAGGAGGACCTGGTCAGCTATGGGACGGGCCTGGAGCCTCTGGAAGAAGGTGAAAGACCAAAGAAACCAATTCCTCTTCAGAATCAGACTGTCAGAGATGAAAAGGGAAGGTATAAGCGATTTCATGGAGCCTTTAGTGGAGGTTTCTCTGCTGGATATTTCAATACTGTTGGCTCAAAAGAAGGATGGACACCCTCTACCTTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCTTGGTCCTGAAGATTTTATGGATGAAGAGGATCTTAGTGAATTTGGGATAGCGCCTAAAGTGATTGTTACCACAGATGATTTTGCTTCCAAAACCAAAGATAGACTACAAGAAAAGGCCAGACAGTTGGCAGCTGCCACTGCCCCGATCCCTGGAGCCACTCTGCTTGAAGACTTCATAACACCAGCCAAATTATCTGTTGGTTTTGAATTGCTAAGAAAAATGGGTTGGAAGGAGGGACAAGGAATTGGTCCTCGAACAAAGAGAAGGTCACGCCGACAAAAACCTGATCCTGGAGTAAAAATCTATGGCTGTGCATTACCCCCTGGAGGCTCTGAAGGATCAGAGGATGAAGACAATGACTACTTGCCGGATAATGTGACGTTTGCACCCAAAGATGTCACTCCTGTGGATTTCACACCTAAGGATGATGTACATGGACTGGAGTACAAGGGCCTGGATCCCCACCAAGCTCTGTTTGGAACTTCAGCTGAACATTTGAATCTTTTCAGTGGAGGATCTGAGGGAGCCAGCAATCTTCTTGGAGATGCTGTACTAAATAAAGGAAGAAAACTGGGAATTTCAGGCCAGGCTTTTGGTGTCGGTGCCCTGGAAGAGGAAGATGATGATATTTATGCCACAGAAACGCTGTCCAAGTATGACACCATTTTGAAGGATGAGGAGCCTGGAGATGGACTCTATGGCTGGACAGCCCCCAGGGAGTATAAAAGTCAGAAAGAATCCAAGAAAGATCTTCGATATATTGGCAAAATTTTGGATGGATTTTCCTTGGCTTCTAAACCTTTATCATCTAAAAAAATTTATCCACCCCCTGAGCTGCCACAAGACTATCGACCAGTGCATTATTTCCGACCCGTGGTCACCGCCACCTCCGAGAATTCCCATTTACTTCGGGTCTTATCAGAGTCCACCAGAAAGGCAGTGCCTGACCCAGCGACACACAGTAGGCACCAACTGAATGCCTTCAAGCGGGGGGAGTTGCTAGGAGAGACGCCTGTCCAAGGTTCAGCGACTTCAGTGTTAGAGTTTCTGTCCCAAAAAGACAGAGAGAGGATCAAAGAAGTGAAGCAGGCAACTGACCTGAAAGCAGCGCAGCTCCAAGCCAGGAGTCTGGCGCAGAACGTGCCAAGCAGCGGAGCCGGGCCCTCTGTACCGGACCTTGGACACAGCTCTTGGTGCATGGCCCTGGGCGGAGGGACAGCCACCGTGAGACCCAGCAACTTCAAACCTTTTGCTAAAGATCCAGAGAAGCAAAAACGATATGAAGAGTTCTTAGTACAGATGAAAAAGGGTCAGAAAGATGCCCTGGAGCGCTGTCTGGACCCCAGCATGACCGAGTGGGAGCGAGGCCGTGAGCGGGAAGAGTTCTCGCGGGCAGCCCAGCTGTATGTGTCTTCCCATTCGACCCTCTCCTCCAGGTTCACCCATGCCAAGGAGGAAGACGATTCAGATCAAGTAGAAGTCCCACGAGACCAAGAGAATGATGTCAGTGACAAGCAGTCGGCTGTGAAGATGAAGATGTTTGGGAAGCTTACCCGAGACACATTTGAGTGGCACCCTGACAAGCTTCTGTGTAAGAGGTTCAATGTCCCTGACCCTTATCCAGGTTCCACTTTAGTGGGCTTACCAAGAGTGAAGCGTGACAAATACTCTGTCTTCAACTTTCTGACCCTTCCGGAGACTGAACCCACAGCACAAGCATCAAGTGAAAAAGCCCCTCAGCCCCGCAGCTTGGACAAGTCAAGGAAACCGTCCAGATGGGATACATCTCAACATGAAAAGAAAGAAGATTCCATTAGTGAATTTTTAAGTTTGGCTCGATCAAAAGTTGGTCCCGCTAAGCAAGAGTCCAGTCCCTCAGTAAAGCAAGGGGAAGAGCATGTGCCGGAATTACTCTCAAATAAGGCAGTAGACAAAGGTGTGGAGTCACAGCCCGAGGGAGAAGGCAGCCGCCCATCCATGGACTTATTCAAGGCCATCTTCGCCAGCTCCTCAGAGTCCTCCTCGTCGGAGGAAGAGCAAGACAACAGTGAGGATGAGCAGGCGGGCCCGAAGGCCAACTTCACAGGCTCCCAGGACACTGACTTGGGGGAAACTGTGCCTCTGGCACACGCTGCTGAGCCGGCGCCTCCTGAGCCTGCCCCAGTACCTGCCTTCCCGATACAGAAGATGCAGCTGGATGAACGGGAAGAGTTTGGCCCGAGGCTGCCCCCCGTCTTCTGCCCCAATGCTCGTCAGAAACCTGAGACACCTCAAAAAGAGAAATATAAAAAGAACAAAGAAAAACACAAGACCAAAAAAGAGCACAAACGAAAGAAAGAGAAGAAAAAGAAACACAAAAAGCACAAACATAAAAGCAAACAAAAGAATAAAAAACCAGAGAAAAGCAGCAGTTCAGAGAGTTCCGACAGCAGCGACAGCCAGAGTGATGGAGAAGGGCCCACCGACCTGTCACCTCAGGAGCTGCTTTGGCGGCTGAAATGCCTCCCGCTAAAGAGGCAGTGA

Related Sequences

XP_004867163.1 Protein

Gpatch1 PREDICTED: G patch domain-containing protein 1-like isoform X1 [Heterocephalus glaber]

Length: 929 aa      View alignments
>XP_004867163.1
MAAPHSDSEEDLVSYGTGLEPLEEGERPKKPIPLQNQTVRDEKGRYKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKVIVTTDDFASKTKDRLQEKARQLAAATAPIPGATLLEDFITPAKLSVGFELLRKMGWKEGQGIGPRTKRRSRRQKPDPGVKIYGCALPPGGSEGSEDEDNDYLPDNVTFAPKDVTPVDFTPKDDVHGLEYKGLDPHQALFGTSAEHLNLFSGGSEGASNLLGDAVLNKGRKLGISGQAFGVGALEEEDDDIYATETLSKYDTILKDEEPGDGLYGWTAPREYKSQKESKKDLRYIGKILDGFSLASKPLSSKKIYPPPELPQDYRPVHYFRPVVTATSENSHLLRVLSESTRKAVPDPATHSRHQLNAFKRGELLGETPVQGSATSVLEFLSQKDRERIKEVKQATDLKAAQLQARSLAQNVPSSGAGPSVPDLGHSSWCMALGGGTATVRPSNFKPFAKDPEKQKRYEEFLVQMKKGQKDALERCLDPSMTEWERGREREEFSRAAQLYVSSHSTLSSRFTHAKEEDDSDQVEVPRDQENDVSDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFNVPDPYPGSTLVGLPRVKRDKYSVFNFLTLPETEPTAQASSEKAPQPRSLDKSRKPSRWDTSQHEKKEDSISEFLSLARSKVGPAKQESSPSVKQGEEHVPELLSNKAVDKGVESQPEGEGSRPSMDLFKAIFASSSESSSSEEEQDNSEDEQAGPKANFTGSQDTDLGETVPLAHAAEPAPPEPAPVPAFPIQKMQLDEREEFGPRLPPVFCPNARQKPETPQKEKYKKNKEKHKTKKEHKRKKEKKKKHKKHKHKSKQKNKKPEKSSSSESSDSSDSQSDGEGPTDLSPQELLWRLKCLPLKRQ