Sequence details NCBI ID: XM_004867027.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lig1
Gene Name ligase I, DNA, ATP-dependent, transcript variant X1
Entrez Gene ID 101702301

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000004210 (Guinea pig)

Gene Details

DNA ligase

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003796, Guinea pig)

Protein Percentage 90.19%
CDS Percentage 89.82%
Ka/Ks Ratio 0.16128 (Ka = 0.052, Ks = 0.3223)

Genome Location

Sequence Coding sequence

Length: 2757 bp    Location: 5665682..5708823   Strand: +
Raw sequence   
>XM_004867027.1
ATGCAGCGGAGTATCATGTCATTTTTCCACCCCATGAAAGAGGGTAAAGCAAAGAAGCCTGAGAAGGAGACAAACAACAGCAGCAGAGAGATGGAGCCCCCTCCAAAGGTGGCACTAAAGGAGTGGAACAGAGTGGTGCCTGAGAGCGAGTCTCCGGTGAAGAGGCCGAAGAGGAAGGTGGTCCCGGCCTTGAGCAGTGAAGGGGAGGAGGAAGATGAAGCTCTCAGCCCCACCAAAGACCAGAATCCTGGGCCAGGCTCCCCACAGGGGTCCCCTTCCAGTCCTGCCACAAGTCCCAAGAATAGCCCTTCCCTCTCGGACACCTCCCCCATGGATGTCTCCCCATCAGGAATCCCAAAGCGTCTCACAGCTCGGAAGCAGCTCCCAAAACGAGTAATTCAGGCTGACCTGGAAGATCAGAGTGAGGACAGGAACAGGGAAGCCAAGAGGAGGAGGAAGGAGGAGAAAGAAGCAGAGGTGCCAGGAGAAAGCCCCACAGAGACTGGGGTGGCAGAAGTGAAGGAAGAGGAGGAGAGGGGCCAGCCCTGGACACCGCCTGAGCTCCCAGCGCCCCCCAAAGCAGAGACCCCAACAGAGACAGAAAGTGTTTCCACACCCAAGGGGACTGGGAAGCAGGAGCCACAGGAAAAGGACCGGAACAAGGCTGCTCCCAGAGGACCCAGGACCCTCAGCAGTTTCTTCATGCCCCGGAAGCCGGCAGTCAGAACCCAAGTGAAGGAGCAGTCAGGTACTCCGGGAAAGGAGGAGGCCGAGGGATCCCTGGACCCAGTAAGCTACAATCCCGCCAAGAACAACTACCATCCCATTGAGGATGCCTGCTGGAGTCGGGGCCAGAAGGTCCCTTACCTGGCCGTGGCCCGGACGTTTGAGAAGATTGAGGAGGTTTCTGCTCGGCTCCGGATGGTGGAGACGCTGAGTAACCTGCTGCGCTCTGTGGTGGCCCTGTCCCCTCCAGACCTGCTCCCTGTCCTCTACCTCACCCTTAACCGCCTTGGGCCTCCCCAGCAGGGCCTGGAGCTTGGCGTTGGCGATGGTGTCCTTCTCAAGGCCGTAGCCCAGGCCACAGGCCGGCAGCTGGAATCTGTCCGGGCCGAGGCTGTTGAGAAGGGTGACGTGGGGCTGGTGGCCGAGAACAGCCGTAGCACCCAGAGACTCATGCTGCCGCCGCCTCCTCTTACCAGCGCTGGGGTCTTCTCCAAGTTCCGGGACATCGCCCAGCTCACCGGCAGCGCTGCCGTGACCAAGAAGATGGATATCATCAAAGGCCTCTTTGTCGCCTGCCGCCACTCAGAAGCCCGCTTCATCGCCAGGGCCCTGAGTGGACGGCTTCGCCTTGGGCTGGCCGAGCAGTCGGTGCTCGCTGCCCTCTCCCAGGCTGTGAGCCTCACACCCCCAGGCCAAGAATTCCCTCCAGCCGTGGTGGATGCTGGGAAGGGCAAGACTGCAGAGGCCAGAAAGACGTGGCTGGAGGAACAAGGCATGATCTTGAAGCAGACGTTTTGTGAGGTGCCTGACCTGGACCGAATCATCCCTGTGCTTCAGGAGCATGGCCTGGAGCATCTCCCGGAGCACTGCAGGCTGAGCCCAGGCGTCCCTCTGAAGCCGATGTTGGCCCATCCCACTCGGGGTGTCAGTGAAGTCCTGAAACGCTTTGAGGAGGCAGCCTTCACCTGCGAGTACAAATACGATGGGCAGAGGGCACAGATCCATGTTGTGGAAGGCGGGGAAGTGAAGATCTTCAGCAGGAATCAGGAAGACAACACGGGAAAGTACCCCGACATCATCAGCCGCATCCCCAAGATTAAACTCCCCTCAGTCACATCCTTTATCCTGGACACCGAAGCAGTGGCTTGGGACCGGGAGAAGAAGCAGATCCAGCCGTTCCAAGTGCTTACCACTCGCAAGCGGAAGGAGGTAGACGCGGCAGAGATCCAGGTGCAGGTGTGTCTGTATGCTTTCGACCTCATCTTCCTCAACGGAGAGTCCCTGGTCCGTCAGCCCCTGTCACAACGCCGGCAGCTGCTCCGGGAGAACTTTGTAGAGACGGAGGGCGAGTTTGTCTTCGCTACCTCCCTGGACACCAAGGACATGGAGCAGATAGCTGAGTTCTTGGAGCAATCGGTGAAAGACTCCTGCGAGGGGCTGATGGTGAAGACCTTGGATGTGAATGCCACCTACGAGATCGCCAAGAGGTCGCACAACTGGCTCAAGCTGAAGAAGGACTACCTCGATGGTGTGGGTGACACCCTGGACCTCGTGGTGATCGGTGCCTACCTGGGCCGGGGAAAGCGGGCCGGCCGCTATGGAGGCTTTCTGCTGGCTGTCTATGATAAGGAGAGCGAGGAGCTGCAGGCCATATGCAAGCTTGGAACGGGCTTCAGCGATGAGCAGCTGGAAGAGCATTACCAGAGCCTCCAGGCCCTGGTGCTGCCCACCCCACGCCCCTACGTGCGGGCTGACGGTGCTGTGGCGCCCGACCACTGGCTGGACCCCAGCGCCGTGTGGGAGGTGAAGTGCGCTGATCTCTCGCTCTCCCCCGTCTACCCTGCTGCCCGGGGCCTGGTGGACAGTGAGAAGGGCATCTCCCTTCGCTTCCCTCGGTTTATTCGCGTCCGTGAAGATAAGAAGCCAGAGGAGGCCACTACCAGTGCCCAGGTGGCCTGTCTGTATCGCAAGCAAAGTCAAATTCAGAACCAAGGTATTGACTCAGACTCTGATAATGAAGATTTCTACTAA

Related Sequences

XP_004867084.1 Protein

Lig1 PREDICTED: DNA ligase 1 isoform X1 [Heterocephalus glaber]

Length: 918 aa      
>XP_004867084.1
MQRSIMSFFHPMKEGKAKKPEKETNNSSREMEPPPKVALKEWNRVVPESESPVKRPKRKVVPALSSEGEEEDEALSPTKDQNPGPGSPQGSPSSPATSPKNSPSLSDTSPMDVSPSGIPKRLTARKQLPKRVIQADLEDQSEDRNREAKRRRKEEKEAEVPGESPTETGVAEVKEEEERGQPWTPPELPAPPKAETPTETESVSTPKGTGKQEPQEKDRNKAAPRGPRTLSSFFMPRKPAVRTQVKEQSGTPGKEEAEGSLDPVSYNPAKNNYHPIEDACWSRGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLTLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAVEKGDVGLVAENSRSTQRLMLPPPPLTSAGVFSKFRDIAQLTGSAAVTKKMDIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLQEHGLEHLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVVEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIFLNGESLVRQPLSQRRQLLRENFVETEGEFVFATSLDTKDMEQIAEFLEQSVKDSCEGLMVKTLDVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAVYDKESEELQAICKLGTGFSDEQLEEHYQSLQALVLPTPRPYVRADGAVAPDHWLDPSAVWEVKCADLSLSPVYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVACLYRKQSQIQNQGIDSDSDNEDFY