Sequence details NCBI ID: XM_004866956.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ppfia3
Gene Name protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3, transcript variant X2
Entrez Gene ID 101708879

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PPFIA3 ENSCPOG00000003554 (Guinea pig)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003211, Guinea pig)

Protein Percentage 98.99%
CDS Percentage 93.51%
Ka/Ks Ratio 0.01184 (Ka = 0.0043, Ks = 0.3669)

PPFIA3 ENSG00000177380 (Human)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000335614, Human)

Protein Percentage 98.74%
CDS Percentage 92.65%
Ka/Ks Ratio 0.01169 (Ka = 0.0054, Ks = 0.4588)

Ppfia3 ENSMUSG00000003863 (Mouse)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000003961, Mouse)

Protein Percentage 97.73%
CDS Percentage 88.2%
Ka/Ks Ratio 0.01276 (Ka = 0.0104, Ks = 0.817)

Ppfia3 ENSRNOG00000020731 (Rat)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 (Ppfia3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028142, Rat)

Protein Percentage 98.07%
CDS Percentage 87.84%
Ka/Ks Ratio 0.01054 (Ka = 0.009, Ks = 0.8516)

Genome Location

Sequence Coding sequence

Length: 3579 bp    Location: 4959132..4942540   Strand: -
Raw sequence   
>XM_004866956.1
ATGATGTGCGAGGTGATGCCCACCATCAGCGAGGATGGCCGGCGGGGCTCGGCCCTGGGCCCGGACGAGGCGGGTGGCGAGCTGGAGCGCCTCATGGTCACCATGCTCACGGAGCGCGAGCGCCTGCTCGAGACGCTGCGCGAGGCGCAGGACGGGCTGGCGACGGCGCAGCTGCGGCTGCGCGAGCTGGGCCACGAAAAGGACTCGCTGCAGCGCCAGCTCAGCATCGCGCTGCCCCAGGAGTTTGCAGCTCTGACCAAGGAGTTGAATTTATGTCGGGAGCAGCTGCTGGAGAGGGAGGAAGAGATTGCGGAGCTGAAGGCGGAGCGGAACAACACACGGCTCCTCCTGGAACATCTAGAGTGCCTGGTGTCCAGGCACGAGAGGTCACTGCGCATGACCGTGGTGAAGCGCCAGGCCCAGTCACCGGGCGGGGTCTCCTCCGAGGTGGAGGTGCTCAAGGCGCTCAAGTCTCTCTTCGAGCACCACAAGGCCCTGGATGAGAAGGTCCGGGAGCGGCTGCGCATGGCGCTGGAGCGAGTCGCGGTGCTGGAGGAGGAGCTGGAGCTGAGCAATCAGGAGACTCTGAGCCTTCGAGAGCAGCTGTCTAGGCGGAGGTCTGGGCTGGAAGAGCCGGGAAAGGATGGAGATGGGCAGACCCTTGCCAATGGCCTGGGTCCAGATTCTAGCCGGCGCACTGCAGAGCTGGAGGAGGCCCTGGAGCGGCAGCGTGCAGAGGTGTGCCAGCTGCGGGAGCGCCTGGCCGTGCTGTGCCGTCAGATGAGCCAGCTGGAGGAGGAGCTGGGCACCGCTCACCGTGAGCTGGGCAAGGCCGAGGAGGCCAACTCCAAGCTCCAGCGTGACCTCAAGGAGGCGCTGGCTCAGCGGGAGGACATGGAGGAGCGGATCACCACGCTGGAGAAGCGCTACCTGAGCGCCCAGCGTGAGGCTACATCTCTGCATGACGCCAATGACAAGCTGGAGAACGAGCTGGCCAGCAAGGAGTCGCTGTACCGGCAGAGTGAAGAGAAGAGTCGGCAGCTGGCCGAGTGGCTGGACGACGCCAAGCAGAAGCTGCAGCAGACGCTGCAGAAGGCTGAGACCCTGCCCGAGATAGAGGCGCAGCTGGCCCAGCGAGTGGCCGCGCTCAACAAGGCTGAGGAACGTCATGGGAATTTTGAGGAGCGGCTTCGGCAGCTGGAAGCCCAGTTGGAGGAGAAGAACCAGGAGCTGCAGCGGGCGAGGCAGCGGGAAAAGATGAACGACGACCACAATAAGCGGCTGTCGGAGACAGTTGACAAGCTGCTGAGCGAGTCCAACGAGCGGCTGCAATTACACCTCAAGGAGCGCATGGGGGCGCTGGAGGAGAAGAACTCGCTGAGTGAGGAGATTGCCAACATGAAGAAGCTGCAGGATGAGTTGCTGCTGAACAAGGAGCAGCTCTTGGCTGAGATGGAGCGGATGCAGATGGAAATCGACCAGCTTCGGGGGAGGCCACCTTCCTCCTACTCCAGGTCTCTCCCTGGCAGTGCCCTGGAGCTCCGTTACTCTCAGGCACCCACGTTACCTTCTGGTGCCCCCTTGGACCCATATGGGGCTGGCAGTGGCCGGGCAGGCAAGAGGGGCCGCTGGTCAGGGGTCAAAGATGAGCCCTCCAAGGACTGGGAACGATCTACACCTGCTGGGTCCATGCCACCCCCATTCCCTGGGGAACTGGATGGTTCAGATGAGGAGGAGGCCGAAGGGATGTTTGGTGCAGAGCTACTGTCACCCAGTGGGCAGGCTGATGTGCAGACGCTGGCCATCATGCTCCAGGAGCAGCTGGAGGCCATCAACAAGGAGATCAAGTTAATCCAAGAAGAGAAGGAGACAACAGAACAGAGAGCCGAGGAGCTGGAGAGCCGAGTGTCCAGCTCTGGCCTGGACTCCCTGGGCCGCTACCGCAGCAGCTGCTCCCTGCCCCCCTCCCTCACCACCTCCACCCTCGCCAGCCCCTCCCCCCCCAGCTCTGGCCATTCCACACCTCGTCTGGCACCACCCAGCCCTGCCCGAGAGGGCACCGACAAGGCCAATCACGTCCCCAGGGAGGAGGTTTGTGCTCCACGAGGGGAGGGCCCAGCCATTCCAGGAGACACTCCACCGCCCACTCCTCGCTCTGCCCGTCTTGAGAGAATGACCCAGGCCTTAGCACTGCAGGCAGGGTCCTTGGAGGATGGGGGACCCTCGAGGGGAAGTGAGGGTACCCCAGATTCCTTGCACAAAGCCCCCAAAAAGAAGAGCATCAAGTCATCCATAGGCCGCCTCTTTGGCAAGAAAGAGAAGGGGCGGATGGGACCCCCAGGCCGGGACAGCTCTTCCCTGGCTGGAACCCCCTCGGAGGAGACACTGGCTGCCGATCCTCTGGGGCTGGCCAAGCTGACAGGCCCAGGAGACAAGGACCGGAGGAACAAGCGGAAGCACGAGCTCCTGGAAGAGGCCTGTCGCCAGGGCCTGCCTTTCGCTGCTTGGGACGGGCCCACCGTGGTCTCCTGGCTGGAGCTGTGGGTAGGCATGCCCGCGTGGTATGTGGCCGCCTGCCGGGCCAACGTCAAGAGCGGTGCCATCATGGCCAACTTGTCGGACACGGAGATCCAGCGCGAGATCGGCATCAGCAACCCGCTGCACCGGCTCAAGCTGCGCCTCGCCATCCAGGAGATGGTCTCGCTCACCTCCCCTTCGGCGCCCGCCTCCTCCCGCACGCCCACAGGAAACGTGTGGATGACACACGAGGAGATGGAGTCCCTGACGGCCGCAACGAAGCCCGAGACCAAGGAGATCAGCTGGGAGCAGATCCTGGCATATGGAGACATGAACCACGAGTGGGTGGGAAACGACTGGCTGCCCAGCCTGGGGCTGCCCCAGTACCGCAGCTACTTCATGGAGTCGCTGGTGGATGCCCGAATGTTAGATCACCTTAACAAGAAGGAACTCCGGGGCCAGCTCAAGATGGTGGACAGCTTCCACAGGGTGAGTCTACATTATGGGATTATGTGCCTAAAACGGCTGAACTATGACCGAAAGGACCTGGAGCGGAGAAGGGAAGAGAGCCAGACCCAGATCCGAGACGTCATGGTGTGGTCCAACGAGCGAGTCATGGGTTGGGTGTCCGGGCTGGGCCTGAAGGAATTCGCCACGAATCTCACGGAAAGCGGGGTGCATGGGGCTCTGCTCGCCCTGGACGAGACCTTCGACTACTCCGACCTGGCCTTGCTCCTGCAGATCCCCACGCAGAACGCGCAGGCCCGGCAACTCCTAGAGAAGGAATTCAGCAACCTCATCTCCTTAGGCACAGACAGGCGGCTGGACGAGGACAGCGCCAAGTCCTTCAGCCGCTCCCCATCCTGGCGGAAGATGTTCCGAGAGAAGGACCTCCGAGGCGTAACCCCCGACTCGGCTGAGATGTTGCCCCCCAACTTTCGTTCGGCTGCAGCAGGAGCCCTGGGCTCACCAGGGCTCCCTCTCCGAAAGCTGCAGCCTGAAGGCCAGACTTCTGGGAGCTCCCGGGCAGACGGCGTTTCGGTCCGGACCTACTCCTGCTAG

Related Sequences

XP_004867013.1 Protein

Ppfia3 PREDICTED: liprin-alpha-3 isoform X2 [Heterocephalus glaber]

Length: 1192 aa      View alignments
>XP_004867013.1
MMCEVMPTISEDGRRGSALGPDEAGGELERLMVTMLTERERLLETLREAQDGLATAQLRLRELGHEKDSLQRQLSIALPQEFAALTKELNLCREQLLEREEEIAELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDEKVRERLRMALERVAVLEEELELSNQETLSLREQLSRRRSGLEEPGKDGDGQTLANGLGPDSSRRTAELEEALERQRAEVCQLRERLAVLCRQMSQLEEELGTAHRELGKAEEANSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQSEEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLEAQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLSEEIANMKKLQDELLLNKEQLLAEMERMQMEIDQLRGRPPSSYSRSLPGSALELRYSQAPTLPSGAPLDPYGAGSGRAGKRGRWSGVKDEPSKDWERSTPAGSMPPPFPGELDGSDEEEAEGMFGAELLSPSGQADVQTLAIMLQEQLEAINKEIKLIQEEKETTEQRAEELESRVSSSGLDSLGRYRSSCSLPPSLTTSTLASPSPPSSGHSTPRLAPPSPAREGTDKANHVPREEVCAPRGEGPAIPGDTPPPTPRSARLERMTQALALQAGSLEDGGPSRGSEGTPDSLHKAPKKKSIKSSIGRLFGKKEKGRMGPPGRDSSSLAGTPSEETLAADPLGLAKLTGPGDKDRRNKRKHELLEEACRQGLPFAAWDGPTVVSWLELWVGMPAWYVAACRANVKSGAIMANLSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPASSRTPTGNVWMTHEEMESLTAATKPETKEISWEQILAYGDMNHEWVGNDWLPSLGLPQYRSYFMESLVDARMLDHLNKKELRGQLKMVDSFHRVSLHYGIMCLKRLNYDRKDLERRREESQTQIRDVMVWSNERVMGWVSGLGLKEFATNLTESGVHGALLALDETFDYSDLALLLQIPTQNAQARQLLEKEFSNLISLGTDRRLDEDSAKSFSRSPSWRKMFREKDLRGVTPDSAEMLPPNFRSAAAGALGSPGLPLRKLQPEGQTSGSSRADGVSVRTYSC