Sequence details NCBI ID: XM_004866895.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cpt1c
Gene Name carnitine palmitoyltransferase 1C, transcript variant X5
Entrez Gene ID 101719936

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CPT1C ENSCPOG00000015483 (Guinea pig)

Gene Details

carnitine palmitoyltransferase 1C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013963, Guinea pig)

Protein Percentage 84.04%
CDS Percentage 85.95%
Ka/Ks Ratio 0.19157 (Ka = 0.0966, Ks = 0.5042)

CPT1C ENSG00000169169 (Human)

Gene Details

carnitine palmitoyltransferase 1C

External Links

Gene Match (Ensembl Protein ID: ENSP00000376303, Human)

Protein Percentage 84.43%
CDS Percentage 83.4%
Ka/Ks Ratio 0.12459 (Ka = 0.0953, Ks = 0.7652)

Cpt1c ENSMUSG00000007783 (Mouse)

Gene Details

carnitine palmitoyltransferase 1c

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000069539, Mouse)

Protein Percentage 76.32%
CDS Percentage 77.28%
Ka/Ks Ratio 0.12773 (Ka = 0.1472, Ks = 1.1521)

Cpt1c ENSRNOG00000026163 (Rat)

Gene Details

carnitine palmitoyltransferase 1c (Cpt1c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000032802, Rat)

Protein Percentage 75.41%
CDS Percentage 76.61%
Ka/Ks Ratio 0.13324 (Ka = 0.1576, Ks = 1.1829)

Genome Location

Sequence Coding sequence

Length: 2460 bp    Location: 4591045..4578400   Strand: -
Raw sequence   
>XM_004866895.1
ATGGCAGAAGCGCACCAGGCCGTGGGCTTCGTGCCCTCGCTGACCCCGGACGGAGCGGACCCAGAGCTCGCCGGCCAGGTGCTGCGGAACATCTACCTCTCGGGGCTTTGGTCCTGGAAAAGGCACCTTTCGCGTTTCCGGAATGACTTCCTCAGTGGCGTGCTCCCCGCCAGCCCCTTCAGCTGGCTCTTCCTCTTCAGTGCCATCCAGCTTGCCTGGTTCCTCCAGCTGGACCCTTCCCTGGGGCTGATGGAGAAGATTAAAGAGCTGCTGCCGGACTGGGCGGGACAGCACCACAGGCTCCGGGGAGTCCTGGCGGCTGCGCTGTTTGCCTCGTGTTTGTGGGGAGCCCTGATCTTCACGCTTCACGTGGCCCTGAGGCTGCTTCTGTCCTACCATGGCTGGCTGCTCGAGCCCCACGGGGCCATGTCCTCGGCCACCAAGACCTGGCTGGCCCTGGTTCGCATCTTCTCCGGCCGCCGCCCGATGCTCTTCAGCTACCAGCGCTCCCTGCCGCGCCAGCCAGTGCCCTCGGTGCAGGACACCGTGCGAAAGTACCTGGAGTCCATCCGGCCTGTCCTCTCGGACGAGGACTTCAACTGGAGGGCGGTGCTGGCCCAGGAGTTCCTGAAGCAGCAGGCGTCGCTGCTGCAGTGGTACCTGCGGCTCAAGTCCTGGTGGGCAGCCAACTATGTCAGCGACTGGTGGGAAGAGTTCGTGTACCTGCGCTCACGCAGCCCGCTGATGGTGAACAGCAACTATTACCTGACGGATTTCCTGTATGTCACACCCACGCCGCTGCAGGCAGCTCGCGCGGGGAACGCTGTCCATGCCCTGCTCCTGTACCGCCACCGGCTGCAGCGCCAGGAGATCTCCCCGACTCTGCTGATGGGAATGCGCCCCTTGTGCTCTGCCCAGTACGAGAGAATATTCAACACCACGCGGGTCCCGGGGGTGCAGAAAGACCACCTTCGCCACCTCCGCGACAGTCAGCACGTGGCTGTCCTCCACCGGGGCCGCTTCTTCCGCGTGGGGACCCACTCCCCGCACGGCCTGCTGCCCCCAAGGGCCCTGGAGCAGCAGTTTCAGCGCATCCTAGACGACCCTTCGCCTGCCTGTCCCCACGAGGAGCACCTGGCGGCCCTGACGGCCGCTCCCAGGGGCTTGTGGGCCCAGCTTCGCCAGACCCTCAAGACCCGCGCCGCCCACGCCCTGGAGGCCGTGGAGGGGGCCGCGTTCTTCGTGTCGCTGGACCCCGAGCCCGCGGGGCTCACCCGGGAGGACCCCGCGGGCTCGCTGGATGCCTATGCCCACGCCCTGCTGGCCGGCCGCGGCCATGACCGCTGGTTTGACAAATCCTTCACCCTGATCATCTTCTCCAATGGGAAGCTGGGCCTCAGCGTGGAGCACTCGTGGGCCGACTGCCCCATCTCAGGACACATGTGGGAGTTCACCCTGGCCACAGAGTGCTTCCAGCTGGGCTACTCGGCAGACGGCCACTGCAAGGGGTGCCCCGCCCCAGCGCTGCCCCCGCCCCAGCGGCTTCAGTGGGACCTTCCAGACCAGGTCCATCTGTCCATCTCTCTAGCGCTGCGGGGAGCCAAGGCTTTGTCTGGCAACATCGACTGCCACATCTTTCCCTTCTCCCACTTCGGCAAGAGCTTCATCAGACACTGCCACCTCTCCTCAGACAGCTTCGTCCAGATGGCCCTGCAGCTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTCACTTACGAGTCGGCCATGACTCGCTTGTTCCTGGAGGGCCGGACGGAGACAGTGCGATCTTGCACGAGGGAGGCCTGCAGCTTTGTGAGAGCCATGGAGGACAAAGAGAAGACAGACCCGCAGTGCCTCGTCCTGTTCCGCGCCGCAGTGGACAAGCACCAGGCGCTGCTCAAGGCGGCCATGAGCGGGCAGGGGGTCGACCGCCACCTCTTTGCGCTCTACGTCGTGTCGCGATTCCTTCATATGCAGTCGCCCTTCCTGGCCCAGGTTTACTCGGAGCAGTGGCAACTGTCCACCAGCCAGATCCCTGTTCAGCAGATGCACCTGTTTGATGTCCACAATTACCCGGATTATGTTTCCTCGGGTGGCGGATTTGGGCCCGCGGATGCCCACGGTTATGGTGTGTCTTACATCTTCATGGGGGATGACGCGATCACCTTCCACATCTCCAGCAAAAAATCCAGCACAAAAACGGTGAGACAGACTTCATCCCGGCCTCCTCTCTCAGCCCCGGGCTCCTCTCCTGGTTCCCTGGGTCTGACGGTTCCTGCCTCCAGGACTCCCGCCGGCTGGGTCGGCACATCGAGGCTGCGCTGCTGGATGTGGCCTCCCTGTTTCAGGCCGGACAGCGTATGCAGCGCCGGTTCAGCGGTTCAGCGGAGGAAGACTCGGGGCACAGATGTGGATTTCTCTCCAGTAAAACTCTGA

Related Sequences

XP_004866952.1 Protein

Cpt1c PREDICTED: carnitine O-palmitoyltransferase 1, brain isoform isoform X5 [Heterocephalus glaber]

Length: 819 aa      View alignments
>XP_004866952.1
MAEAHQAVGFVPSLTPDGADPELAGQVLRNIYLSGLWSWKRHLSRFRNDFLSGVLPASPFSWLFLFSAIQLAWFLQLDPSLGLMEKIKELLPDWAGQHHRLRGVLAAALFASCLWGALIFTLHVALRLLLSYHGWLLEPHGAMSSATKTWLALVRIFSGRRPMLFSYQRSLPRQPVPSVQDTVRKYLESIRPVLSDEDFNWRAVLAQEFLKQQASLLQWYLRLKSWWAANYVSDWWEEFVYLRSRSPLMVNSNYYLTDFLYVTPTPLQAARAGNAVHALLLYRHRLQRQEISPTLLMGMRPLCSAQYERIFNTTRVPGVQKDHLRHLRDSQHVAVLHRGRFFRVGTHSPHGLLPPRALEQQFQRILDDPSPACPHEEHLAALTAAPRGLWAQLRQTLKTRAAHALEAVEGAAFFVSLDPEPAGLTREDPAGSLDAYAHALLAGRGHDRWFDKSFTLIIFSNGKLGLSVEHSWADCPISGHMWEFTLATECFQLGYSADGHCKGCPAPALPPPQRLQWDLPDQVHLSISLALRGAKALSGNIDCHIFPFSHFGKSFIRHCHLSSDSFVQMALQLAHFRDRGQFCLTYESAMTRLFLEGRTETVRSCTREACSFVRAMEDKEKTDPQCLVLFRAAVDKHQALLKAAMSGQGVDRHLFALYVVSRFLHMQSPFLAQVYSEQWQLSTSQIPVQQMHLFDVHNYPDYVSSGGGFGPADAHGYGVSYIFMGDDAITFHISSKKSSTKTVRQTSSRPPLSAPGSSPGSLGLTVPASRTPAGWVGTSRLRCWMWPPCFRPDSVCSAGSAVQRRKTRGTDVDFSPVKL