Details from NCBI annotation

Gene Symbol Nup62
Gene Name nucleoporin 62kDa, transcript variant X5
Entrez Gene ID 101708524

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NUP62 ENSCPOG00000020597 (Guinea pig)

Gene Details

nucleoporin 62kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015793, Guinea pig)

Protein Percentage 89.88%
CDS Percentage 89.95%
Ka/Ks Ratio 0.20399 (Ka = 0.0562, Ks = 0.2756)

NUP62 ENSG00000213024 (Human)

Gene Details

nucleoporin 62kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000471191, Human)

Protein Percentage 82.88%
CDS Percentage 83.27%
Ka/Ks Ratio 0.19301 (Ka = 0.1061, Ks = 0.5495)

Nup62 ENSMUSG00000043858 (Mouse)

Gene Details

nucleoporin 62

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000056785, Mouse)

Protein Percentage 80.08%
CDS Percentage 78.78%
Ka/Ks Ratio 0.14401 (Ka = 0.1281, Ks = 0.8895)

Nup62 ENSRNOG00000048733 (Rat)

Gene Details

nucleoporin 62 (Nup62), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000067556, Rat)

Protein Percentage 80.47%
CDS Percentage 78.13%
Ka/Ks Ratio 0.13459 (Ka = 0.1272, Ks = 0.9448)

Genome Location

Sequence Coding sequence

Length: 1557 bp    Location: 4410186..4428231   Strand: +
>XM_004866854.1
ATGAGCGGGTTTAATTTCGGAAGCACTGGTGCTTCCACAGGTGGATTCACATTTGGCACTGCGAGAACAGCAACCACCACACCCTCAACGGGATTTTCTTTCTCCACTCCCGGCACTGGAGGGTTTACCTTTGGAACTCCCTCCCAGCCAGCTGCAAGTACCCCTTCAACCAGCCTCTTCTCACTCAACACCCAAGCTCCAGCAACTCAGACCACTGGATTCACTTTCGGAACAACTCCTGCTTCCACAGCAACTGGCTTTTCCTTAGGGATCAATACCCCAAAGCCAAGCTTGAGCAACATAGCTGCCGCCCCAGTTACGGCAAATCCCAGCGGCTTTGGGCTTGGCAGCAGCACCCTCACCAATGCCATATCAAGTGCTGTCACCTCCAGCCAGGGGACAGCATCCACTGGCTTTGTGTTCGGTTCCTCTACCACCTCCACAGCTCCAGCCACCACGTCTGGAGGGTTCTCCTTCACCAGTGGAAGCACGTCCCAGGCTGGGACCTCTGGCTTCAACATTGGCTCCCTGGGCAGTGTAGCCCAGGCCCAGCCCACGGCACTTCCCGGATTGCCCTTCACTGCAGCCACGCCAGCAGCCACTGCAGCGGGGGCCACCCAGCCAGCTGCACCCACAGCCACTGCCAGCAGTGCAGGGCCCACCCTCTTTGCCTCAATAGCAGCTGCTCCCACCTCGTCCACCACTGGGCTCGCCCTCTGTGTCCCAGCAACCACCACTGGAGCTCCTGGCGCTGGGACCCTGGGTTTCAGCCTAAAAGCCCCCGAAACCGCTTCTAGCACCTCAGCAGCAACATCCACCACTGTGGCCACAGCCAGCACCACTGCCGCCACCGGCTTTGCTTTGAATATAAAGCCACTGGTGCCAGCTACAATATCCAGCGGTGCAGCAGCAGGTGTGACTGCTGCATCTGGCTCCGTTGCAGCTACTGGGACATCCACCTCTCCTGTGATGACCTACGCACAGCTGGAGAGCCTGATCAACAAGTGGAGCCTGGAGCTGGAGGACCAGGAGCGCCACTTCCTCCAGCAGGCCACCCAGGTCAACGCCTGGGACCGCACGCTAATCGAGAATGGGGAGAAGATCACCAGCCTGCACCGTGAGGTGGAGAAGGTGAAGCTGGACCAAAGGAGGCTGGACCAGGAGCTCGACTTCATCCTGTCCCAGCAGAAGGAGCTGGAAGACCTGCTGAGCCCCCTGGAGGAGTCAGTGAAGGAGCAGAGCGGGACCATCTACCTGCAGCACGCCGACGAGGAGCGTGAGAAGACCTACAAGCTGGCTGAGAACATTGATGCCCAGCTGAAGCGCATGGCCCAGGACCTCAAGGACATCATCGAGCACCTGAACACGTCCGGAGGCCCTGCTGACACCAGCGACCCACTGCAGCAGATCTGCAAGATCCTCAACGCACACATGGACTCGCTGCAGTGGATCGACCAGAACTCGGCCCTTCTGCAGAGGAAGGTGGAGGAGGTGACCAAGGTGTGCGAGGGCCGCCGCAAGGAGCAGGAGCGCAGCTACAGGATCACATTTGACTGA

Related Sequences

XP_004866911.1 Protein

Nup62 PREDICTED: nuclear pore glycoprotein p62 isoform X5 [Heterocephalus glaber]

Length: 518 aa      View alignments
>XP_004866911.1
MSGFNFGSTGASTGGFTFGTARTATTTPSTGFSFSTPGTGGFTFGTPSQPAASTPSTSLFSLNTQAPATQTTGFTFGTTPASTATGFSLGINTPKPSLSNIAAAPVTANPSGFGLGSSTLTNAISSAVTSSQGTASTGFVFGSSTTSTAPATTSGGFSFTSGSTSQAGTSGFNIGSLGSVAQAQPTALPGLPFTAATPAATAAGATQPAAPTATASSAGPTLFASIAAAPTSSTTGLALCVPATTTGAPGAGTLGFSLKAPETASSTSAATSTTVATASTTAATGFALNIKPLVPATISSGAAAGVTAASGSVAATGTSTSPVMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQRRLDQELDFILSQQKELEDLLSPLEESVKEQSGTIYLQHADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLNTSGGPADTSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEVTKVCEGRRKEQERSYRITFD