Sequence details NCBI ID: XM_004866791.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Shank1
Gene Name SH3 and multiple ankyrin repeat domains 1, transcript variant X3
Entrez Gene ID 101720175

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SHANK1 ENSCPOG00000025493 (Guinea pig)

Gene Details

SH3 and multiple ankyrin repeat domains 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018641, Guinea pig)

Protein Percentage 95.04%
CDS Percentage 90.48%
Ka/Ks Ratio 0.05632 (Ka = 0.026, Ks = 0.4622)

SHANK1 ENSG00000161681 (Human)

Gene Details

SH3 and multiple ankyrin repeat domains 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000293441, Human)

Protein Percentage 94.09%
CDS Percentage 88.71%
Ka/Ks Ratio 0.04286 (Ka = 0.028, Ks = 0.6528)

Shank1 ENSMUSG00000038738 (Mouse)

Gene Details

SH3/ankyrin domain gene 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000103571, Mouse)

Protein Percentage 92.95%
CDS Percentage 84.49%
Ka/Ks Ratio 0.03947 (Ka = 0.0374, Ks = 0.9486)

Shank1 ENSRNOG00000019207 (Rat)

Gene Details

SH3 and multiple ankyrin repeat domains 1 (Shank1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026100, Rat)

Protein Percentage 92.76%
CDS Percentage 84.47%
Ka/Ks Ratio 0.0403 (Ka = 0.0381, Ks = 0.9452)

Genome Location

Sequence Coding sequence

Length: 6411 bp    Location: 3936911..3978630   Strand: +
Raw sequence   
>XM_004866791.1
ATGACCCACAGCCCCGCGACAAGCGAGGACGAGGAACGCCACAGTGCCAGCGAGTGTCCCGAGGGGGGCTCAGCGTCCGACAGCTCCCCAGACGGGCCAGGGCGAGGCCTCCGGGGGACCCGGGGCCAGGGCAGTGGGGCACCTGGTAACCTGGCCTCGGCCCGAGGCCTCCAGGGCCGCTCCATGTCTGTCCCTGACGACGCCCACTTCAGCATGATGGTCTTCAGGATTGGCATCCCGGACCTGCACCAGACAAAATGCCTGCGCTTCAACCCCGATGCCACCATCTGGACAGCCAAGCAGCAGGTGCTCTGCGCCCTGAGCGAGAGCCTGCAGGACGTGCTCAACTACGGCCTCTTCCAGCCGGCCACCTCCGGCCGCGACGCCAACTTCCTGGAGGAGGAGCGGCTGCTACGGGAGTACCCCCAGTCCTTCGAGAAGGGGGTCCCCTACCTGGAGTTCCGATACAAGACCCGAGTTTACAAACAGACCAACCTGGACGAGAAGCAGCTGGCCAAGCTGCACACGAAGACAGGGTTGAAGAAGTTCCTGGAGTATGTGCAGCTCGGGACGTCTGACAAGGTGGCGCGACTGCTGGACAAGGGGCTGGACCCCAACTACCACGACTCGGATTCGGGAGAGACCCCCTTGACTCTAGCGGCCCAGACTGAAGGCTCTGTAGAGGTGATTCGAACTCTGTGCCTGGGTGGAGCCCACATTGACTTCCGGGCCCGGGATGGCATGACAGCGCTGCACAAGGCCGCGTGTGCCCGACACTGCCTGGCGCTCACGGCACTCCTGGACCTCGGGGGATCCCCCAACTACAAGGACCGCCGGGGCCTAACCCCTCTGTTCCACACCGCCATGGTGGGGGGGGACCCCCGCTGCTGCGAGCTGCTTCTGTACAACAGAGCCCAGCTGGGCATAGCAGACGAGAATGGCTGGCAGGAGATTCACCAGGCCTGTCAGCGGGGCCACTCTCAGCACCTGGAGCACCTGCTCTTCTACGGGGCTGAGCCTGGAGCCCAGAATGCCTCGGGGAACACGGCCCTGCACATCTGTGCTCTCTACAACAAGGAGACCTGCGCCAGGATCCTCCTGTATCGAGGGGCCAACAAGGATGTGAAGAATAATAGCGGACAGACACCCTTTCAGGTGGCAGTGATTGCTGGGAACTTCGAGCTAGGGGAGCTCATCCGGAACCATCGGGAGCAGGATGTGGTGCCCTTTCAGGAGTCCCCAAAGTACGCGGCTCGGCGACGGGGACCCCCAGGGGCAGGGTTGACAGTGCCCCCTGCGCTGCTCAGGGCCAACAGCGACACCAGCATGGCGCTGCCCGACTGGATGGTGTTCTCTGCCCCGGGGCCCTCACCCTCCGGGGCCCCGGGCCCTACCTCAGGGCCCCAGGTCCAGTCACAGCCCTCAGCCCCCAGCACCAAGCTCAGCAGCGGGACCCTCCGAAGTGCCAGCAGCCCTCGGGGCGCCAGGGCCCGGTCCCCATCCCGAGGGAGGCACCCCGAGGATGCCAAGAGGCAACCCCGAGGACGGCCCAGCTCCAGCGGGACGCCCCGGGAAGGGCCTGCCGGGGGAACGGGGGGCTCCGGGGGTCCTGGGGGCTCCCTGGGCAGCCGAGGCCGAAGGAGGAAACTCTACTCAGCAGTCCCTGGACGCTCCTTCATGGCTGTGAAGTCGTACCAGGCCCAAGGCGAGGGCGAGATCTCCCTGAGCAAGGGCGAGAAGATCAAAGTGCTCAGCATCGGGGAAGGAGGCTTCTGGGAAGGGCAGGTCAAAGGTCGAGTAGGCTGGTTCCCCTCTGACTGCCTGGAAGAGGTGGCAAACCGCTCCCAGGAGGGAAAGCAAGAGAGCCGCAGCGACAAGGCAAAGAGACTCTTCCGACATTATACCGTGGGCTCCTACGACAGCTTCGATGCCCCAAGCTTGATGGATGGGATTGGCCCAGGGAGCGATTACATCATTAAGGAGAAAACAGTCTTGCTGCAGAAGAGGGACAGCGAGGGGTTTGGGTTCGTGCTCCGGGGGGCCAAGGCGCAGACCCCCATCGAGGAGTTCACCCCTACCCCGGCCTTCCCGGCGCTGCAGTACCTCGAGTCCGTGGACGAGGGGGGCGTGGCATGGCGGGCTGGACTGCGAATGGGAGACTTCCTCATCGAGGTGAACGGGCAGAATGTGGTGAAGGTCGGCCACCGCCAGGTGGTGAACATGATCCGCCAAGGGGGCAACACGCTCATGGTGAAGGTGGTGATGGTCACCAGGCACCCGGACATGGACGAGGCCGTCCACAAGAAAGCACCCCAGCAGGCGAAGCGGCTCCCGCCCCCAGCGATCTCCCTGCGCTCCAAGTCAATGACCTCCGAGCTGGAGGAAATGGAGTATGAGCAACCTCCTACGCCGGTGCCCAGCATGGAGAAAAAGCGGACAGTGTATCAGATGGCTCTCAACAAACTGGACGAGATACTGGCTGCAGCCCAGCAGACTATCAGCGCGAGCGAGAGCCCTGCGCCGGGAGGCCTGGCGTCCCTGGGCAAGCACCGGCCCAAAGGCTTTTTCGCCACCGAGTCAAGCTTCGATCCCCATCACCGCTCCCAGCCAAGTTACGAGCGCCCTTCCTTCCTGCCTCCTGGACCTGGGCTCATGCTCCGACAAAAATCTATCGGGGCTGCAGAGGATGACAGACCGTACCTAGCACCCCCAGCCATGAAGTTCAGCCGCAGCCTGTCTGTGCCGGGCTCGGAGGACATCCCCCCGCCGCCCACCACGTCCCCACCAGAGCCCCCGTACAGCACACCCCCGGCCCCCTCCTCCTCGGGCCGCCTCACCCCGTCCCCGCGGGGAGGCCCCTTCAACCCCGGCTCCGGGGGACCCCTCCCCGCCTCCTCCCCAGCGTCCTTTGACGGCCCCTCCCCTCCCGACACGCGCGTGGGGGGCCGGGACAAGAGCCTGTACCACGGTGGCCCCTTGCCCCCTGCGCACCACCACCACCACCACCACCACCACCACCACGCGCACCCGCCGCACCCGCCCGAGATGGAGACGGGCGCCCCCGACGACGCCCCGCCACGCCTGGCTCTGGGGCCCCAGCCCAGCCTGCGGGGCTGGAGGGGCGGCGGGCCCAGCCCGAGCCCGGGGGCGCCCTCACCGTCGCACCACGCGGGGGCTGGCGCCGGGGGCGCCCCGCAAGCCCCGGCCCTGCGCTACTTCCAGCTGCCGCCGCGCGCCGCTAGCGCCGCCATGTACGTGCCCGCGCGCTCCGGCCGCGGCCGCAAGGGGCCGCTGGTCAAGCAGACCAAGGTGGAGGGCGAGCCGCACAAGGGCGCCCTGCCTCCCGCCGCGCCCGGGTCCCCCGCGTCGCCGCAGCCGCTGCCCCCCGCGCCCGCGCCGGCCGAGAAGAACTCCATCCCCATCCCCACCATCATCATCAAGGCTCCGTCCACCAGCAGCAGCGGCCGCAGCAGCCAGGGCAGCAGCACCGAGGCCGAGCCGCCCACCCAGCCCGAGACCCCCGCAGGCGGCGGGGGCTCGTCATCCAGCCCAGCGCCGCCCCTGTCGCCCGTGCCGCCCTCGCCGTCGCCCGTGCCCACGCCCGCGTCGCCCAGCGGCCCGGCCACCCTGGACTTCACCAGCCAGTTCGGGGCGGCGCTGGTGGGCGCGGCGCGCAGGGATGGCGGCTGGCAGAACGAGGCCCGCCGGCGCTCCACGCTCTTCCTTTCCACGGACGCGGGAGACGAGGAAGGCGGCGAAGGCGGGCTGGGCGCCGGGGCCACCCCGGGCCCGCGGCTGCGCCACTCCAAGTCCATCGACGAGGGCATGTTCTCCGCCGAGCCCTACCTCCGCCTGGAGTCTGCGGGCGGCTCGGGGAGCTCCGGCTACGCGGGCTACTCGGCGGGCGCACGCGCCTACGCGGGCAGCGGGGCCAGCAGCGCCTTCTCCAGCTTCCTGCCCCCGCGGCCCCTGCTGCACCCGCTCACCGGCAAGGCCCTGGACCCGGCCTCCCCGCTCGGGCTGGCGCTGGCCGCCCGTGAGCGCGCGCTGAAGGAGTCCTCAGAGGGCGGCGGCGCCCCCCAGCCCCCGCCCCGCCCCCCCTCGCCCCGCTACGACGCGCCGCCGCCCACCCCGCATCACCACTCGCCCCACGCGCACCACGAGCCCGTGCTGCGCCTCTGGGGGGCGCCGCCGCCCGACCCCCCGCGCCGGGAGCTGGGCTACCGAGCGGGGCTGGGCGGGCCAGAGAAGCCGCTCCCCGCCAGCCCACCCGCCGCGCGGCGCTCGCTGCTGCACCGCCTGCCGCCCACGGCGCCCGGCGTGGGGCCCCTGCTGCTGCAGCTGGGGCCCGAGCCTCCCGCCCCACACCCCGGGGTCAGCAAGGCCTGGAGGTCTGGAGGCGCGGAGGAGCCTGAGCGGCTACCCCTCCACGTGCGCTTCCTCGAGAACTGTCAGCCGCGCGCCAGGCCGGCGGCGGTCTCCAGGGGGCCCTCGGCGGAGGATGGGCCCGGGGTCCCGCCGCTCAGCCCGCGCCGCTCCGTGCCCGCCTGTCCCACGTCCCCGCGGGGCGGCGAGGAGAATGGGCTCCCTCTGCTCGTGCTGCCGCCGCCGGCCCCGTCGGTGGACGCGGACGACGGTGACTTCCTCTTTGCGGAGCCGCTTCCCCCACCCCTCGAGTTTTCCAACAGCTTCGAGAAGCCGGAGTCGCCCCTCACGCCGGGCCCCCCCCAGCCGCTCCCGGACCCCCCTGCTCCAGTCACCCCCCTGCCCCCCGTGCCCCCCCCGGCGGCAGCCGCCCCTGGCCCGCCCGCCCTGGACTCCACTGCATCCAGCCTGACGTCCTATGACAGCGAGGTGGCCACGCTCACTCAGGGGCCCCCCGCGGCTCCCGGGGACCACCCCACCCCAGGCCCGCCGGCCCCAGCGGCCCCAGCGCCCCCCGCCCCGCAGCCGGGCCCAGATCCGCCACCGGGCACGGACTCCGGGATCGAGGAGGTGGACAGTCGCAGCAGCAGTGACCACCCCTTGGAGACCATCAGCAGCGCGTCCACGCTGAGCAGCCTGTCTGCCGAGGGCGGGGGCGGGGTGGCCAGCGGGCCTGAGCTGCTGGACACCTACGTGGCCTACTTGGACGGCCAGGCCTTCGGGGGCAGCGGGCCGCCGTATCCCCCGCAGCTCACGACTCCCTCGAAGCTCCGAGGCCGGGCGCTGGGGGCAGCCGGAGGCCTTCGACCCGGCCCCAGTGGCGGGCTCCGAGACCCTGTCACCCCCACCAGCCCCACGGTCTCTGTGACTGGGGCCGGAAACGACGGGCTGCTGGCCCTGAGCGCCTGTTCGGGGCCCTCTTCGGCAGGCGTGGCCGGGGGCCCGGTATCGGTGGAGCCGGAAGTCCCCCCGGTGCCCTTGCCTGCCGCCGCCTCCCTGCCTCGGAAGCTACTGCCCTGGGAGGAGGGCCCGGGCCCGCCACCACCACCCCTGTCTGGGCCCCTGTCCCAGCCTCAGGCCTCCGCCTTGGCCACCGTCAAAGCCAGCATCATCAGCGAACTCAGCTCCAAGCTCCAGCAGTTCGGGGGCTCCTCAGCAGCTGGAGGGGCTCTGCCTTGGGCCCGGGGAGGCAGCGGGGGCACTGGGGACAGCCACCACGGTGGAGCCGGCTACGTCCCCGAGAGGACCTCCTCCCTGCAGCGGCAGAGGCTCTCCGACGACTCCCAGTCCTCGCTCCTCCCCAAGCCCGTGGGCAGCCTGTTTCAGAACTGGCCCAAGCCACCTCTGCCGCCACTCCCCACTGGATCCGGGGTGTCGCCTTCAGCCACTGCACCCCCGGGGGCCATCTCACCTTCTGCTTCCTCCTCCTCCACCTCCTCCCGCCACCTCCAGGGCGTAGAGTTCGAGATGCGGCCCCCCCTGCTCCGCCGGGCCCCCAGCCCCTCGCTGCTGCCCGCCTCGGAGCACAAGGTCAGCCCAGCACCCAGGCCCTCGTCCCTGCCCATCCTGCCTTCAGGCCCTCTCTACCCGGGCCTCTTCGACATCCGCGGCTCCCCCACCGGTGGGGCGGGGGGCTCCGCGGACCCCTTCGCCCCTGTCTTCGTGCCGCCGCACGCGGGGATGTCCGGGGGCCTGGGAGGAGCCTTGTCGGGGGCCTCTCGCTCCCTGTCGCCCACCCGCCTGCTGTCGCTGCCCCCGGACAAACCGTTTGGCGCCAAACCTCTGGGCTTCTGGACCAAGTTCGATGTGGCCGACTGGCTAGAGTGGCTGGGCCTGGCCGAGCACCGGGCCCGCTTCCTGGACCACGAGATCGACGGCTCCCACCTGCCCGCCTTGACCAAGGAGGACTATGTGGACCTGGGGGTCACCAGGGTGGGCCACCGCATGAACATCGACCGGGCTCTCAAGTTTTTCCTGGAGAGGTGA

Related Sequences

XP_004866848.1 Protein

Shank1 PREDICTED: SH3 and multiple ankyrin repeat domains protein 1 isoform X3 [Heterocephalus glaber]

Length: 2136 aa      View alignments
>XP_004866848.1
MTHSPATSEDEERHSASECPEGGSASDSSPDGPGRGLRGTRGQGSGAPGNLASARGLQGRSMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLFQPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGLKKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELLLYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKETCARILLYRGANKDVKNNSGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARRRGPPGAGLTVPPALLRANSDTSMALPDWMVFSAPGPSPSGAPGPTSGPQVQSQPSAPSTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEISLSKGEKIKVLSIGEGGFWEGQVKGRVGWFPSDCLEEVANRSQEGKQESRSDKAKRLFRHYTVGSYDSFDAPSLMDGIGPGSDYIIKEKTVLLQKRDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPQQAKRLPPPAISLRSKSMTSELEEMEYEQPPTPVPSMEKKRTVYQMALNKLDEILAAAQQTISASESPAPGGLASLGKHRPKGFFATESSFDPHHRSQPSYERPSFLPPGPGLMLRQKSIGAAEDDRPYLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGGRDKSLYHGGPLPPAHHHHHHHHHHHAHPPHPPEMETGAPDDAPPRLALGPQPSLRGWRGGGPSPSPGAPSPSHHAGAGAGGAPQAPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPHKGALPPAAPGSPASPQPLPPAPAPAEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPETPAGGGGSSSSPAPPLSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARRDGGWQNEARRRSTLFLSTDAGDEEGGEGGLGAGATPGPRLRHSKSIDEGMFSAEPYLRLESAGGSGSSGYAGYSAGARAYAGSGASSAFSSFLPPRPLLHPLTGKALDPASPLGLALAARERALKESSEGGGAPQPPPRPPSPRYDAPPPTPHHHSPHAHHEPVLRLWGAPPPDPPRRELGYRAGLGGPEKPLPASPPAARRSLLHRLPPTAPGVGPLLLQLGPEPPAPHPGVSKAWRSGGAEEPERLPLHVRFLENCQPRARPAAVSRGPSAEDGPGVPPLSPRRSVPACPTSPRGGEENGLPLLVLPPPAPSVDADDGDFLFAEPLPPPLEFSNSFEKPESPLTPGPPQPLPDPPAPVTPLPPVPPPAAAAPGPPALDSTASSLTSYDSEVATLTQGPPAAPGDHPTPGPPAPAAPAPPAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGGVASGPELLDTYVAYLDGQAFGGSGPPYPPQLTTPSKLRGRALGAAGGLRPGPSGGLRDPVTPTSPTVSVTGAGNDGLLALSACSGPSSAGVAGGPVSVEPEVPPVPLPAAASLPRKLLPWEEGPGPPPPPLSGPLSQPQASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGSGGTGDSHHGGAGYVPERTSSLQRQRLSDDSQSSLLPKPVGSLFQNWPKPPLPPLPTGSGVSPSATAPPGAISPSASSSSTSSRHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYPGLFDIRGSPTGGAGGSADPFAPVFVPPHAGMSGGLGGALSGASRSLSPTRLLSLPPDKPFGAKPLGFWTKFDVADWLEWLGLAEHRARFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFFLER