Sequence details NCBI ID: XM_004866663.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hspbp1
Gene Name HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1, transcript variant X2
Entrez Gene ID 101708996

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HSPBP1 ENSCPOG00000027227 (Guinea pig)

Gene Details

HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015229, Guinea pig)

Protein Percentage 97.77%
CDS Percentage 92.74%
Ka/Ks Ratio 0.02124 (Ka = 0.0108, Ks = 0.5088)

HSPBP1 ENSG00000133265 (Human)

Gene Details

HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000255631, Human)

Protein Percentage 95.81%
CDS Percentage 90.04%
Ka/Ks Ratio 0.02627 (Ka = 0.0207, Ks = 0.7864)

Hspbp1 ENSMUSG00000063802 (Mouse)

Gene Details

HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000078886, Mouse)

Protein Percentage 96.92%
CDS Percentage 87.3%
Ka/Ks Ratio 0.01503 (Ka = 0.0166, Ks = 1.107)

Hspbp1 ENSRNOG00000017795 (Rat)

Gene Details

HSPA binding protein, cytoplasmic cochaperone 1 (Hspbp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024251, Rat)

Protein Percentage 95.8%
CDS Percentage 87.39%
Ka/Ks Ratio 0.02099 (Ka = 0.0206, Ks = 0.9819)

Genome Location

Sequence Coding sequence

Length: 1077 bp    Location: 1997747..2009683   Strand: +
Raw sequence   
>XM_004866663.1
ATGGCGGACAAAGGCTCGGGGGGCAGTCGCCTTCCCCTGGCGTTGCCCCCAGCCTCCCAGGGCTGCTCCTCAGGGGGCAGCGGCGGCTCCTCTGCTGAGGGCTCGGGCAACCCCCGGCCACCGCGCAACCTGCAAGGCCTGCTGCAGATGGCCATCACGGCGGGCTCGATGGAGCCAGACCCCCCTCCAGAACCCATGAGCGAGGAGAGGCGGCAGTGGCTGCAGGAGGCCATGTCAGCTGCCTTCCGTGGCCAGCGGGAGGAGGTAGAGCAGATGAAGAGCTGCCTCCGAGTGCTATCCCAGCCCATGCCTGCTGCAGCTGGGGAGACCGAACTGGCTGCTGACCAGCAGGAACGAGAGGGGGCCCTGGAGCTGCTGGCTGACCTGTGTGAGAACATGGACAATGCTGCAGACTTCTGCCAGCTGTCGGGGATGCACCTGCTGGTGGGCCGCTACCTCGAGGCCGGTGCTGCGGGGCTGCGGTGGCGCGCAGCACAGCTCATCGGCACGTGCAGCCAGAACGTGGCGGCCATCCAGGAGCAGGTGCTGGGCCTCGGTGCCCTGCGCAAGCTGCTGCGGCTGCTCGACCGCGACCCCTGCGACACTGTCCGTGTCAAGGCGCTCTTCGCCATCTCCTGCCTTGTGCGGGAGCAGGAGGCAGGGCTGCTGCAGTTCCTCCGCCTGGACGGCTTCTCCGTGCTGATGCGGGCCATGCAGCAGCAGGTGCAGAAGCTCAAGGTGAAGTCGGCATTCCTGCTGCAGAACCTGCTGGTGGGCCACCCGGAGCACAAAGGGACCCTGTGCTCCATGGGGATGGTCCAGCAGCTGGTGGCCCTCGTGCAGACTGAACACAGCCCTTTCCACGAGCACGTGCTTGGGGCCCTGTGCAGCCTGGTGACAGACTTCCCCCAGGGCGTGCGCGAATGCCGGGAGCCTGAGCTGGGGCTGGAGGAGCTGCTACGCCACCGCTGCCAGCTGCTGCAGCAGCGCGAGGAGTACCAGGAGGAGCTGGAGTTCTGTGAGAAGCTGCTGCAGACCTGCTTCTCCAGTCCCATGGACGACAGCATGGATCGGTGA

Related Sequences

XP_004866720.1 Protein

Hspbp1 PREDICTED: hsp70-binding protein 1 isoform X2 [Heterocephalus glaber]

Length: 358 aa      View alignments
>XP_004866720.1
MADKGSGGSRLPLALPPASQGCSSGGSGGSSAEGSGNPRPPRNLQGLLQMAITAGSMEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKSCLRVLSQPMPAAAGETELAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVQTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLLQTCFSSPMDDSMDR