Sequence details NCBI ID: XM_004866640.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ssc5d
Gene Name scavenger receptor cysteine rich domain containing (5 domains)
Entrez Gene ID 101701820

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SSC5D ENSCPOG00000026570 (Guinea pig)

Gene Details

scavenger receptor cysteine rich domain containing (5 domains)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016319, Guinea pig)

Protein Percentage 83.4%
CDS Percentage 85.09%
Ka/Ks Ratio 0.25294 (Ka = 0.1013, Ks = 0.4003)

SSC5D ENSG00000179954 (Human)

Gene Details

scavenger receptor cysteine rich domain containing (5 domains)

External Links

Gene Match (Ensembl Protein ID: ENSP00000374274, Human)

Protein Percentage 76.88%
CDS Percentage 80.85%
Ka/Ks Ratio 0.27226 (Ka = 0.1469, Ks = 0.5394)

Ssc5d ENSMUSG00000035279 (Mouse)

Gene Details

scavenger receptor cysteine rich domain containing (5 domains)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000052126, Mouse)

Protein Percentage 70.95%
CDS Percentage 74.81%
Ka/Ks Ratio 0.30805 (Ka = 0.2162, Ks = 0.7018)

Ssc5d ENSRNOG00000016687 (Rat)

Gene Details

scavenger receptor cysteine rich domain containing (5 domains) (Ssc5d), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022480, Rat)

Protein Percentage 71.78%
CDS Percentage 75.97%
Ka/Ks Ratio 0.28803 (Ka = 0.1996, Ks = 0.6928)

Genome Location

Sequence Coding sequence

Length: 4176 bp    Location: 1867876..1849816   Strand: -
Raw sequence   
>XM_004866640.1
ATGAGGGTCTTGGCCTGTCTCCTCGCAGCACTGGTGGGGATCCAGGCCGTTGACCGGCTGCGCCTGGCCGATGGCCCCCACGGCTGTGCCGGCCGCCTGGAGGTCTGGTATGGCAGCCGCTGGGGCACCGTGTGTGACGACGGATGGGACCTGCAGGATGCCGCGGTGGCCTGCCGGGAGCTGGGCTGCGGAGGGGCGCTGGCCGCCCCCGGGGGCGCCTTCTTTGGGGAGGGCACAGGGCCCGTGTGGCTCAGTGAGCTGGCCTGCCAGGGCCTCGAGGAGCGGCTGGGCCTCTGTCCCCACCGGGGCTGGAAGGCCCACATCTGCTCGCACGAGGAGGACGCGGGCGTGGTCTGCACAGGCCAGCGTGCGGCAGACTCTCAGCATGACTCAACCTCCCCGCTGGATGGGGAGCCCAGGCCTGGCTCCGAGGAGCCCCCTGTGACTCACGCCCCCCGCCCAGCTGGAAGCCCCCAGAACGGCCCCCGGAAGAAAAGCCCCCGGCCACCCAAGCAGGCCAAGTCCACCAGAGCCCCTTTGCTGACCACCGGGGCCCCCCGCCAAGACCGGCTGCGCCTGGTCTCGGGCCCCCACAGCTGTGCCGGCCGCCTGGAGGTCTGGCACGGCGGGCGCTGGGGGTCCGTGTGTGACGACGGATGGGACCTGCAGGACGCCGCGGTGGCCTGCCGGGAGCTGGGCTGCGGAGGGGCGCTGGCCGCCCCCGGGGGCGCCAGATTCGGGCCTGGCTCGGGGCCCGTGTGGATGGACGACGTGGGCTGTGCAGGAGCAGAGCAGGCCCTCCGGGACTGTCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACAGGGAGGACGCCGGGCTGGTGTGCACGGGGCCTGCCCCGAGGCTGCGCCTGGCCGATGGCCCCCATGGCTGTGCCGGCCGCCTGGAGGTCTGGCACGGCGGGCGCTGGGGGTCCGTGTGTGACGACGCCTGGGACCTGCAGGACGCCGCGGTGGCCTGCCGGGAGCTGGGCTGCGGAGGGGCGCTGGCCGCTCCGGGGGCCGCCTTCTTTGGGGAGGGGTCCGGCCCCATCGTCCTGGATGATCTTCGGTGTCGGGGAAACGAGACGGCCTTGCGGTTCTGCCCCGCGCGGCCCTGGGGCCAGCACGACTGTCACCACCGGGAGGACGCTGGGGCTGTGTGTGACGGCATGCCTCTCGGCTACGCAACCCCCACCCGCCCTGTGGTGGACAGCAACAGCTCAGGGCCCGGGACGTCCGCGCCCGGGGCGTGGACACTGGGACCCCTGTCCAGCACAGTGAGCCAGGCTCCCAGGATGCCAGGCAGCTTGCCTCCTGCAGCCTCTCCGACTGCCCCTCAGGAGCCTGGGCCAGATGCAGGGTCTCCTCAGCTGCGCCTGGTGGCCGGGCCCAGCAGGTGCTCAGGCCGGCTGGAGGTCTGGCATGACGGGCGCTGGGGGACAGTGTGTGATGACAGCTGGGACCTGCGGGACTCAGCCGTGGTCTGCCGGGAGCTGGGCTGCAGGGGGCCTCGGCAGCCAGATCCCGCTGTGGGCCGCTTCGGCTGGGGTGCGGGTCCCATTTGGCTGGATGATGTGGGCTGTGTGGGGACCGAGGCTTCGCTGTCTGACTGCCCTGCTGCTCCCTGGGGGAAGCACAACTGCGCTCACAATGAGGATGTCGGGGTCATGTGTACTGGGACCCCTGGCTTGGACACCATCTCAGACCCCTTCAGCTGGAGCTGGCTCCCTGGGCTGGGTAGAGATCGGGATGCTTGGCTCCCAGGAGAACTGGCCACCAAGCCCTCTGCAAGTCTGACCTCCATTGTTCCCGAGAAAACAACCACTAAGGCTCCACGGAAAACCCCCAAGAGTACTAAGAAGTGGGTGACCAAACATGCAAAGAGACCAACTGCTCAGCCCCCCAGGATGCCAACTACTAAACACTCCAGGGGCCTGGGGACCCAGAGCCCCCCAGAACTAACCTCACAGACCACAACCCTGACTACTGAGGCCTCCTCAAAGCAAACCTCTGAGTTATTAAAAAGGCTGCTCACAGAGGCTCCCCACAGATGGACCTCACACACCACCTCCAAGCCAACTCCTCAGGCCCCCTGGACATGGCCCTCAGGGACCATGACAACGCTGTCCCCTCAAGGCCCTCAAGAAATGACCTCTGAGACCACCATCGAGAAAATCCGTCAGGCTTCCCTGGAGCCATCTGCTGAGACCCCAGCCTTCTCCCCCACGGCCAGCATCCCTGGGGAACCAGGCCCCTTCCGGGTTCGTCTGGCCGACGGACCCAACAGGTGTGCTGGCCGGCTAGAAGTGTGGCATGCCGGACGCTGGGGGACGGTCTGTGACGACAGCTGGGACCTGCGGGATGCCACTGTGGTCTGCTGGGAACTGGGTTGTGGAAAGGTCCGGCCCCGAGTGGGCAAAACCCACTACGGCCCTGGGACCGGGCCCATCTGGTTGGATGACATGGGCTGTAAGGGAAGTGAGACCTCGCTGAGCGACTGCCCCTCAGGGGGCTGGGGGAAGCACAACTGTGACCATGAGGAAGACGTGGGGTTTACCTGCACTGGCTACACAGATGATGATGATTATCCCCCCTGGACCTGGGACCCCACTTCAGGAGAAGACCTGGCCAAAGGGGCCACCATGGCACCAGGGCCTGGACGTGCGCTTCCATGGAGCAGCACCAGGCACCCAGCGATCTCCTCCCCAGCAACACGGCTCCTTTCGGTCACAGGTGACCAGGAGGGGTACAAGCCTTCCGGGACATGGGACACGCCTTGGGGCAGGGGCTCAGCCAAACGGACGCCCACCACAGCACCCACGCTTTCCAGTGGCACCTCCAGGCCCCCAGGACATCCCTCTCTGGCTCCCAGGGCCCACGGGGACACAGGTTCCCCACAGAGGGCCGGGCCCGAGCGTCGCCTGCTGCGCCCCACTGCAGCCCGGGCGGCACCCCAGACGCGGCCCCCGGCCCCCTCTGCCTTGCCGGGGCCCCGGGGCCTGCAGCCCACCTCTGGCCCGGCCTCTGTCCTCCCCGGCACCTCAGTGGCCGGCCCGGACCTGCCCTCCTCGACCACGCCCGACCTCTCCCCGGCACCGACCCCTCCGCCCACTGCGCCCCGGGAGCTGACGTCTGACCCCTCCGTACCGCCAGAGGGGACCCCAGGGCCAAACACAGCCCCATACTGGGGGACAGCCGTAGGGACTTCCGGGTCCCCAGAGCCCTCCACAAGCCCGCACCCCACTGCCACCACATACTCCCCCACCACCCCATACCCCACTATAACCCCGAACCCCACCACAACCGCAAACCCCACCACCAGCCCACACTACACCACAACCCTGCAACCCATGGCAACCCCGCTCCCTGCTTCAACCCTTCCCACCACCACAATCCCTCTCCCCGCCACGACCCCCCACCCCACAGCGACTCCCCATCCTGCCACCACCACTCGCCCGGCCAGGACGGCCGACCCCTCCTCCACCCCTATGGTCACTACCAAGTCTCTTCCAACCTCCCTGGGGCCAGAATCACCCTCTTCCACTACAGTGCCAAGGGCTACATCCAGCCTGGGTCCCCAGGTGACCTTCGAGGGGACCCCTCACACCCCCACATCTCAGATGCAGAGCCCAGTGCCCTCTCCAGCCTCAGAGGCCAGCCCCTCCAGGGCCCCTCTAACCTCAAGCAGGGGCCCACTGTCCACTGAGGACTTCAGGCCACCCAGGAGCCAGAACCCCACACTAACCCCAGGCCCAGCCTCCGAGCCCATTCTGCCCTCCGATCCCCACTCCGATCAACTCCCCCATGACCACCCCCCTCTAGGGCCAACCCCTGGTCAGACCCTGGGCCCCCTTGGCCCGTGTGCCTGCCCAGCAGCCCCTGTGAGGGTCAGGGCTTGTGAGCCGCCTGCCTTGGTGGAGCTGGTGGCTGCTGTGAGGGACGTTGGTGGCCAGCTGCAGAGGCTGGCCACGGTCCTGGAACAAGACTGGCAGGAGCGCCAAGCCCTCGGGCTAGGGCTGGCCCAGTTGGGCCTGGGGCAGCTGGGTGAGACAGTAAGGAGACTGGCAGAGGTGGCCTGGGCCCCCAGCACTCCTGTGTCCACTTCCACCACCCCCGAGGAAGAGGAGAGGCCTCTGAGGGGAGATGTATGA

Related Sequences

XP_004866697.1 Protein

Ssc5d PREDICTED: soluble scavenger receptor cysteine-rich domain-containing protein SSC5D [Heterocephalus glaber]

Length: 1391 aa      View alignments
>XP_004866697.1
MRVLACLLAALVGIQAVDRLRLADGPHGCAGRLEVWYGSRWGTVCDDGWDLQDAAVACRELGCGGALAAPGGAFFGEGTGPVWLSELACQGLEERLGLCPHRGWKAHICSHEEDAGVVCTGQRAADSQHDSTSPLDGEPRPGSEEPPVTHAPRPAGSPQNGPRKKSPRPPKQAKSTRAPLLTTGAPRQDRLRLVSGPHSCAGRLEVWHGGRWGSVCDDGWDLQDAAVACRELGCGGALAAPGGARFGPGSGPVWMDDVGCAGAEQALRDCPRSPWGRSNCDHREDAGLVCTGPAPRLRLADGPHGCAGRLEVWHGGRWGSVCDDAWDLQDAAVACRELGCGGALAAPGAAFFGEGSGPIVLDDLRCRGNETALRFCPARPWGQHDCHHREDAGAVCDGMPLGYATPTRPVVDSNSSGPGTSAPGAWTLGPLSSTVSQAPRMPGSLPPAASPTAPQEPGPDAGSPQLRLVAGPSRCSGRLEVWHDGRWGTVCDDSWDLRDSAVVCRELGCRGPRQPDPAVGRFGWGAGPIWLDDVGCVGTEASLSDCPAAPWGKHNCAHNEDVGVMCTGTPGLDTISDPFSWSWLPGLGRDRDAWLPGELATKPSASLTSIVPEKTTTKAPRKTPKSTKKWVTKHAKRPTAQPPRMPTTKHSRGLGTQSPPELTSQTTTLTTEASSKQTSELLKRLLTEAPHRWTSHTTSKPTPQAPWTWPSGTMTTLSPQGPQEMTSETTIEKIRQASLEPSAETPAFSPTASIPGEPGPFRVRLADGPNRCAGRLEVWHAGRWGTVCDDSWDLRDATVVCWELGCGKVRPRVGKTHYGPGTGPIWLDDMGCKGSETSLSDCPSGGWGKHNCDHEEDVGFTCTGYTDDDDYPPWTWDPTSGEDLAKGATMAPGPGRALPWSSTRHPAISSPATRLLSVTGDQEGYKPSGTWDTPWGRGSAKRTPTTAPTLSSGTSRPPGHPSLAPRAHGDTGSPQRAGPERRLLRPTAARAAPQTRPPAPSALPGPRGLQPTSGPASVLPGTSVAGPDLPSSTTPDLSPAPTPPPTAPRELTSDPSVPPEGTPGPNTAPYWGTAVGTSGSPEPSTSPHPTATTYSPTTPYPTITPNPTTTANPTTSPHYTTTLQPMATPLPASTLPTTTIPLPATTPHPTATPHPATTTRPARTADPSSTPMVTTKSLPTSLGPESPSSTTVPRATSSLGPQVTFEGTPHTPTSQMQSPVPSPASEASPSRAPLTSSRGPLSTEDFRPPRSQNPTLTPGPASEPILPSDPHSDQLPHDHPPLGPTPGQTLGPLGPCACPAAPVRVRACEPPALVELVAAVRDVGGQLQRLATVLEQDWQERQALGLGLAQLGLGQLGETVRRLAEVAWAPSTPVSTSTTPEEEERPLRGDV