Details from NCBI annotation

Gene Symbol Ptbp1
Gene Name polypyrimidine tract binding protein 1, transcript variant X6
Entrez Gene ID 101715554

Database interlinks

Part of NW_004624828.1 (Scaffold)

For more information consult the page for NW_004624828.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PTBP1 ENSCPOG00000025512 (Guinea pig)

Gene Details

polypyrimidine tract binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017543, Guinea pig)

Protein Percentage 98.03%
CDS Percentage 91.32%
Ka/Ks Ratio 0.0117 (Ka = 0.0081, Ks = 0.6961)

PTBP1 ENSG00000011304 (Human)

Gene Details

polypyrimidine tract binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000349428, Human)

Protein Percentage 98.74%
CDS Percentage 90.48%
Ka/Ks Ratio 0.00757 (Ka = 0.006, Ks = 0.7893)

Ptbp1 ENSMUSG00000006498 (Mouse)

Gene Details

polypyrimidine tract binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000126192, Mouse)

Protein Percentage 97.12%
CDS Percentage 87.93%
Ka/Ks Ratio 0.01381 (Ka = 0.0131, Ks = 0.9511)

Genome Location

Sequence Coding sequence

Length: 1674 bp    Location: 7762589..7750323   Strand: -
>XM_004866005.1
ATGGACGGCATCGTCCCAGACATAGCAGTTGGTACAAAGCGGGGATCTGACGAGCTCTTTTCTACGTGTGTAACCAACGGGCCCTTTATCATGAGCAGCAACTCGGCTTCCACAGCAAACGGAAACGACAGCAAGAAGTTCAAAGGTGACAGCAGGAGTGCTGGCGTCCCCTCCAGAGTGATCCACATCCGAAAGCTGCCCAGCGACGTGACTGAAGGCGAGGTCATCTCCCTGGGGCTGCCCTTTGGGAAGGTCACCAATCTCCTGATGCTCAAGGGGAAGAACCAGGCTTTCATCGAGATGAACACGGAGGAGGCAGCCAACACCATGGTGAACTACTATACCTCTGTGACGCCTGTCCTGCGAGGTCAGCCCATCTACATCCAGTTCTCCAACCACAAAGAGCTCAAGACTGATAGCTCCCCGAACCAGGCGCGGGCCCAGGCAGCACTACAGGCTGTGAACTCTGTCCAGTCGGGGAACCTGGCCCTGGCTGCTTCGGCGGCTGCTGTGGACGCAGGGATGGCAATGGCTGGGCAGAGCCCCGTGCTCAGGATCATCGTGGAGAACCTCTTCTACCCCGTGACCCTGGATGTGCTGCACCAGATCTTCTCCAAGTTTGGCACTGTCCTGAAGATCATCACCTTCACGAAGAACAGTCAGTTCCAGGCGCTGCTCCAGTACGCCGACCCCGTGAGCGCCCAGCACGCCAAGCTGTCGCTGGACGGGCAGAACATCTACAACGCCTGCTGTACCCTGCGCATCGACTTCTCCAAGCTCACCAGCCTCAATGTCAAGTACAACAACGACAAAAGCCGTGACTATACGCGCCCAGACCTGCCCTCTGGGGACAGCCAGCCCTCGCTGGACCAGACCATGGCCGCAGCCTTCGGTGCACCTGGTATAATCTCAGCCTCTCCGTATGCAGGAGCTGGTTTCCCTCCCACCTTTGCCATTCCTCAAGCCGCAGGCTTGTCTGTCCCCAACGTGCACGGAGCGCTGGCGCCCCTGGCCATTCCCTCAGCAGCTGCAGCAGCAGCTGCAGCGGGCCGCATCGGCATCCCAGGCCTCGGGGGGGCCGGGAACTCTGTCCTGCTGGTCAGCAACCTCAACCCGGAGAGAGTCACACCCCAAAGCCTCTTTATTCTTTTCGGCGTTTACGGTGACGTGCAGCGGGTGAAGATCTTGTTCAACAAGAAGGAGAACGCACTGGTGCAGATGGCAGATGGGAGCCAGGCCCAGCTGGCCATGAGTCACCTGAACGGGCACAAGCTGCATGGGAAGCCGATCCGCATCACGCTGTCCAAGCACCAGAATGTGCAGTTGCCCAGGGAGGGCCAGGAGGACCAGGGCCTCACCAAGGACTATGGCAACTCGCCCCTGCATCGCTTCAAGAAGCCTGGCTCCAAGAACTTCCAGAACATCTTCCCACCCTCCGCCACACTGCACCTCTCCAACATCCCGCCCTCAGTATCTGAGGAAGACCTCAAGAGCCTCTTCTCCAGCAACGGGGGTGTGGTGAAGGGCTTCAAGTTCTTCCAGAAAGACCGCAAGATGGCGCTGATCCAGATGGGCTCAGTGGAGGAGGCTGTGCAGGCCCTCATCGACCTGCACAACCACGACCTGGGCGAGAACCACCACCTGCGGGTGTCCTTCTCCAAGTCCACCATCTAG

Related Sequences

XP_004866062.1 Protein

Ptbp1 PREDICTED: polypyrimidine tract-binding protein 1 isoform X6 [Heterocephalus glaber]

Length: 557 aa     
>XP_004866062.1
MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASTANGNDSKKFKGDSRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIGIPGLGGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI