Sequence details NCBI ID: XM_004865982.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hmha1
Gene Name histocompatibility (minor) HA-1, transcript variant X2
Entrez Gene ID 101709827

Database interlinks

Part of NW_004624828.1 (Scaffold)

For more information consult the page for NW_004624828.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HMHA1 ENSG00000180448 (Human)

Gene Details

histocompatibility (minor) HA-1

External Links

Gene Match (Ensembl Protein ID: ENSP00000439601, Human)

Protein Percentage 82.67%
CDS Percentage 81.9%
Ka/Ks Ratio 0.07434 (Ka = 0.0951, Ks = 1.2789)

Hmha1 ENSMUSG00000035697 (Mouse)

Gene Details

histocompatibility (minor) HA-1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000097100, Mouse)

Protein Percentage 82.88%
CDS Percentage 79.04%
Ka/Ks Ratio 0.07482 (Ka = 0.1012, Ks = 1.3519)

Hmha1 ENSRNOG00000013220 (Rat)

Gene Details

histocompatibility (minor) HA-1 (Hmha1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000057381, Rat)

Protein Percentage 83.6%
CDS Percentage 79.49%
Ka/Ks Ratio 0.07415 (Ka = 0.0984, Ks = 1.3274)

Genome Location

Sequence Coding sequence

Length: 3387 bp    Location: 7571309..7557874   Strand: -
Raw sequence   
>XM_004865982.1
ATGTTCTCCAGGAAGAAACGCGAGCTCATGAAAACCCCTTCCATCTCCAAAAAGAACCGCGCGGGAAGCCCCAGCCCGCAGCCGTCGGGGGAGCTGCCCAGGAAAGATGGGCTTGATGCTGTGTTCCCTGGACCCGGCCTGGAGCCTCCGGTCACGTCCTCTGGTGTCAAGAACACAGCCACCCTGAAGCGGCCCACCAGCCTCAGTCGCCACGCCAGTGCTGCTGGCTTCCCACTCTCTGGCGCTGGCTCCTGGACACTAGGCCGGGGCTACCGAAGCCCCCTGACAGCCGCCAGCCCTGCAGAGGTGCCCACCGAGGGGCCTGGCACCGAGGCCACGGATGACATCTCAAACCTGCTGGCTGATGTGGCTCGCTTCGCAGAGGGTCTGGAAAAACTCAAGGAGTGTGTATTGCATGATGATCTCCTGGAGGCCCGCCGGCCGCTGGCCCACGAGTGCCTGGGTGAGGCCCTGCGTGTGATGCGCCAGGTTATCTCCAAGTACCCGCTGCTGAACACTGTGGAGACACTGACTGCTGCAGGCACACTCATCGCCAAGGTTAAAGCCTTCCATTACGAATGTAACAATGAGTCGGACAAGAGGGAGTTCGAGAAGGCCCTGGAGACCATTGCAGTATCCTTCAGCAGCACTGTGTCTGAGTTCCTCATGGGCGAGGTGGACAGCAGCACACTCCTGGCCGTGCCACCGGGGGACCCCAGCCAGTCCATGGAGAGCCTGTACCAGGGCAGCGAGGGCTCCCCGCCCAGCGCCGAGGACTGCGAGGAGGGCTGCCCGCCCCCGGAGGAAGTGGACATGCTACTGCAGCGCTGCGAGGGCGGCGTGGACGCGGCTCTGCAGTACGCCAAGAATATGGCCAAGTACATGAAGGACCTTATTGGCTACCTGGAGAAGCGGACTGCGCTGGAGATGGAGCTCGCCAAAGGTCTGCAGAAACTTATCCATGGTGCCAGACAGAACATCACGCACGAGCCCCACATGCCCCTGCTGTCCATCTACTCGCTGGCCCTGGAGCAGGACCTGGAGTTTGGCCATGGCATGGTGCAGGCAGTGGGCACACTGCAGACCCAGACCTTCATGCAGCCCCTCACCCTGCGGCGGCTGGAACATGAGAGGCGCAGGAAGGAGATCAAGGAGTCCTGGCACCGCGCACAGCGGAAGCTGCAAGAGGCCGAGGCCAACCTGCGCAAGGCCAAGCAGAGCTATGTCCAGCGCTGCGAGGACCACGACAAGGCCCGCCTCCAAGTGGCCAAGGCCGAGGACGAGCAGGCGGCCACCTCACCTGGGGCGGGCAGCACAGCTTCCAAGACGCTGGACAAGCGGCGGCGGCTGGAGGAGGAAGCCAAGAACAAGGCGGATGAAGCCATGGCCACGTACCGCACGTGCGTGGCAGATGCTAAGACGCAGAAACAGGAGCTGGAGGACACAAAGGTGACCGCGCTGCGGCAGATCCAGGAGGTCATCCGCCAGAGCGACCAGACCATCAAGTCGGCCACCATCTCCTACTACCAGATGATGCACATGCAGACGGCGCCGTTGCCCGTGCACTTCCAGATGCTGTGTGAGAGCAGCAAGCTCTATGACCCTGGCCAGCAGTACGCATCGCATGTGCGACAGCTGCAGCGTGGCGAGGAGCCCGATGTGCGCTACGACTTCGAACCACATGTGTCTGCCAACGCCTGGTCCCCTGTCACACGTGCCCGGAAGAACAGCTTCAACATTGGCGACACTTTGGGGACAGAGGCCACCAGCAGCAGCCCCTCAGAGGAAGGAGGGCCCAGTGAAGGGACATCTGCCAAAGACCACAGGGGGGGACGGGGACACCAGGTGCACAAGTCGTGGCCAATCTCAGTCTCAGACTCGGACGGCAGCCTGGCCCCCAGCGACGGCTCAGGGGACTTTAAGAAGTTCCAGCGGATGTCATCCAGTGGCACTGTGTCATCCAGTGAGGAGCTGGTGGACCAAGAGGGTGGAGCAGGGACAGCGGAGTTTGAACAGGATGACATCAACAGCATGGCCCCCCAGCTGCCAGTGGCTGTGCCCAGTGGGCCCTTTCGCCATGTCGGGCTGTCCAAGGCAGCACGCACGCACCGGCTCCGGAAGCTCCGCACACCGGCCAAGTGCCGGGAATGTAACAGCTATGTCTACTTCCAGGGAGCTGAGTGTGAGGAGTGCTGTCTGGCCTGCCACAAGAAGTGCCTGGAGACCCTGGCCATCCAATGTGGCCACAAAAAGCTGCAGGGCCGCCTTCAGCTCTTCGGACAGGATTTCAGCCGCGCGACCTGGGGTACCCCGGATGGCATCCCGTTCATCGTGAAGAGGTGCCTGTGTGAGATCGAGCGGCGCGCGCTGCGCACCAAGGGCATCTACCGGGTCAACGGGGTGAAGACGCGTGTGGAGAAGCTGTGCCAGGCCTTTGAGACCAGCCAGGAGCTGGTGGAGCTATCACAGGCCTCGCCCCATGACATTAGCAATGTCCTCAAGCTCTACCTGCGCCAGCTGCCGGAGCCACTCATCTCCTTCCGCCTCTATCACGAGCTGGTAGGGCTGGCCAAGGACAGCCTGAAGGCAGAGGCTGAGGCCAAGGCAGCATCCCGGGGGGCCCGGCAGGATGGGTCTGAGAGCGAGGCGGCGGCCATGGCCATGGCGGGGCGCTTGCGGGAGCTGCTGCGGGACCTGCCCCCGGAGAACCAGGCCACGCTGCGGTACCTGCTGCGGCACCTGCGCAGGATTGTGGAGGTGGAACAGGACAACAAGATGACCCCTGGGAACCTAGGCATCGTGTTCGGGCCTACGCTGCTGCGGCCGCGGCCCACCGAAGCCACTGTCTCCCTGTCGTCACTGGTAGACTACCCCCACCAGGCTCGTGTCATCGAGACCCTCATCGTCCACTATAGCCTGGTGTTTGAGGACGAGCCAGAAGAGGGACTCAGGGCACAGGACGAGGCAAGCAGCCAGCGCTCAGAGGTGGTGGTGCCAGTGCCCTACCTGGAGGCCAGGGAGGCTGCCACCTATGCCCTGCAGGAGGAGGACAGGGGCCGAGAATCCCGAGTGGCATCCAATGATTCTGACTCAGAGCTAGAGGAAGCCTCGGACTCCCTGTCCTTGTCAGATGCCAGTGCCCTGCACCGCCTCAGCTTCCTGGAGAAGCAGGAAGGGGAGGCCAGCCCAGAGGAGGGTCCCCGAAGCCGGAGTGGCAGCGAGGAGCAGCTGGGGAATGAGGATGAAGAGGGCCCAGCCCAGCAGCTGTCCACATACAACACCAATCAGTCCAACAATGTGGCGCTTGCCCGGCTGCTGCCCATGAGGCTCCGCACCAAGTGCATCTCAGGGGCCAGCTGTGGACACAGGCGGCCAGAGTTCGTCTGA

Related Sequences

XP_004866039.1 Protein

Hmha1 PREDICTED: minor histocompatibility protein HA-1 isoform X2 [Heterocephalus glaber]

Length: 1128 aa      
>XP_004866039.1
MFSRKKRELMKTPSISKKNRAGSPSPQPSGELPRKDGLDAVFPGPGLEPPVTSSGVKNTATLKRPTSLSRHASAAGFPLSGAGSWTLGRGYRSPLTAASPAEVPTEGPGTEATDDISNLLADVARFAEGLEKLKECVLHDDLLEARRPLAHECLGEALRVMRQVISKYPLLNTVETLTAAGTLIAKVKAFHYECNNESDKREFEKALETIAVSFSSTVSEFLMGEVDSSTLLAVPPGDPSQSMESLYQGSEGSPPSAEDCEEGCPPPEEVDMLLQRCEGGVDAALQYAKNMAKYMKDLIGYLEKRTALEMELAKGLQKLIHGARQNITHEPHMPLLSIYSLALEQDLEFGHGMVQAVGTLQTQTFMQPLTLRRLEHERRRKEIKESWHRAQRKLQEAEANLRKAKQSYVQRCEDHDKARLQVAKAEDEQAATSPGAGSTASKTLDKRRRLEEEAKNKADEAMATYRTCVADAKTQKQELEDTKVTALRQIQEVIRQSDQTIKSATISYYQMMHMQTAPLPVHFQMLCESSKLYDPGQQYASHVRQLQRGEEPDVRYDFEPHVSANAWSPVTRARKNSFNIGDTLGTEATSSSPSEEGGPSEGTSAKDHRGGRGHQVHKSWPISVSDSDGSLAPSDGSGDFKKFQRMSSSGTVSSSEELVDQEGGAGTAEFEQDDINSMAPQLPVAVPSGPFRHVGLSKAARTHRLRKLRTPAKCRECNSYVYFQGAECEECCLACHKKCLETLAIQCGHKKLQGRLQLFGQDFSRATWGTPDGIPFIVKRCLCEIERRALRTKGIYRVNGVKTRVEKLCQAFETSQELVELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVGLAKDSLKAEAEAKAASRGARQDGSESEAAAMAMAGRLRELLRDLPPENQATLRYLLRHLRRIVEVEQDNKMTPGNLGIVFGPTLLRPRPTEATVSLSSLVDYPHQARVIETLIVHYSLVFEDEPEEGLRAQDEASSQRSEVVVPVPYLEAREAATYALQEEDRGRESRVASNDSDSELEEASDSLSLSDASALHRLSFLEKQEGEASPEEGPRSRSGSEEQLGNEDEEGPAQQLSTYNTNQSNNVALARLLPMRLRTKCISGASCGHRRPEFV