Details from NCBI annotation

Gene Symbol Hmg20b
Gene Name high mobility group 20B, transcript variant X3
Entrez Gene ID 101697717

Database interlinks

Part of NW_004624828.1 (Scaffold)

For more information consult the page for NW_004624828.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HMG20B ENSCPOG00000010777 (Guinea pig)

Gene Details

high mobility group 20B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009676, Guinea pig)

Protein Percentage 97.16%
CDS Percentage 93.27%
Ka/Ks Ratio 0.02147 (Ka = 0.0114, Ks = 0.5291)

HMG20B ENSG00000064961 (Human)

Gene Details

high mobility group 20B

External Links

Gene Match (Ensembl Protein ID: ENSP00000328269, Human)

Protein Percentage 95.27%
CDS Percentage 89.17%
Ka/Ks Ratio 0.02095 (Ka = 0.0218, Ks = 1.0399)

Hmg20b ENSMUSG00000020232 (Mouse)

Gene Details

high mobility group 20B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020454, Mouse)

Protein Percentage 90.54%
CDS Percentage 84.96%
Ka/Ks Ratio 0.02488 (Ka = 0.0409, Ks = 1.6448)

Hmg20b ENSRNOG00000020601 (Rat)

Gene Details

high mobility group 20 B (Hmg20b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028002, Rat)

Protein Percentage 90.54%
CDS Percentage 85.28%
Ka/Ks Ratio 0.0291 (Ka = 0.0408, Ks = 1.4017)

Genome Location

Sequence Coding sequence

Length: 954 bp    Location: 6277773..6283154   Strand: +
>XM_004865842.1
ATGTCCCACGGGCCCAAGCAGCCTGCCGCGGCCTCTGTGCCGGCGGGCGGCAAGGCTCCGGGCCCCCACGGGGGCTTTGTGGTGGCTGTCAAGCAGGAGCGCGGCGAGGTCCCTCGGGCTGGCGACAAGAGCTCCCACGAGGAGGAGCCAGTGAAGAAGCGGGGCTGGCCGAAGGGCAAGAAGCGTAAGAAGATTCTACCGAATGGTCCCAAAGCACCAGTCACGGGCTACGTGCGCTTCCTGAATGAGAGGCGCGAGCAGATCCGCACTCGTCACCCAGACCTACCCTTCCCGGAGATCACCAAGATGCTGGGTGCCGAGTGGAGCAAGCTGCAGCCTGGGGAGAAGCAGCGGTACCTGGACGAGGCTGAGAGGGAAAAGCAGCAGTATATGAAGGAGCTGCGGGCCTACCAGCAGTCTGAGGCCTACAAGATGTGCACTGAGAAGATCCAGGAGAAGAAGATCAAGAAAGAGGACTCGGGCTCGGGGGTCGTGAACACGCTTCTGAATGGACACAAGGGTGGGGACTGCGATGGCTTCTCTACCTTTGACGTCCCCATCTTCACTGAAGAGTTCTTGGACCAAAACAAAGCGCGGGAGGCGGAGCTGCGGCGCCTGCGGAAGATGAACGTGGCTTTCGAGGAGCAGAACGCTGTGCTGCAGCGGCACACGCAGAGCATGAGCAGCGCGCGCGAGCGCCTGGAGCAGGAACTGGCGCTGGAGGAGCGGCGGACGCTGGCTCTGCAGCAGCAGCTCCAGGCCGTGCGCCAGGCTCTCACGGCCAGCTTCGCCTCGCTGCCGGTGCCAGGCACCGGAGAGACCCCGACTCTCAGCACCCTGGACTTCTACATGGCCCGGCTGCATGGTGCCATTGAGCGTGACCCGGCAAGGCACGAGAGCCTGATCGTGCGCATCAAGGAGATCCTGGCCCAGGTCGCCAGCGAGCATCTGTAG

Related Sequences

XP_004865899.1 Protein

Hmg20b PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform X3 [Heterocephalus glaber]

Length: 317 aa      View alignments
>XP_004865899.1
MSHGPKQPAAASVPAGGKAPGPHGGFVVAVKQERGEVPRAGDKSSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPGEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSGSGVVNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLSTLDFYMARLHGAIERDPARHESLIVRIKEILAQVASEHL