Details from NCBI annotation

Gene Symbol Ncln
Gene Name nicalin, transcript variant X1
Entrez Gene ID 101720970

Database interlinks

Part of NW_004624828.1 (Scaffold)

For more information consult the page for NW_004624828.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NCLN ENSCPOG00000001074 (Guinea pig)

Gene Details

nicalin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000971, Guinea pig)

Protein Percentage 98.22%
CDS Percentage 94.32%
Ka/Ks Ratio 0.00986 (Ka = 0.007, Ks = 0.7075)

NCLN ENSG00000125912 (Human)

Gene Details

nicalin

External Links

Gene Match (Ensembl Protein ID: ENSP00000246117, Human)

Protein Percentage 95.2%
CDS Percentage 90.94%
Ka/Ks Ratio 0.02074 (Ka = 0.0219, Ks = 1.0543)

Ncln ENSMUSG00000020238 (Mouse)

Gene Details

nicalin homolog (zebrafish)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020463, Mouse)

Protein Percentage 95.38%
CDS Percentage 87.98%
Ka/Ks Ratio 0.0171 (Ka = 0.0213, Ks = 1.2442)

Ncln ENSRNOG00000004793 (Rat)

Gene Details

nicalin (Ncln), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007110, Rat)

Protein Percentage 95.03%
CDS Percentage 88.34%
Ka/Ks Ratio 0.01867 (Ka = 0.0228, Ks = 1.2221)

Genome Location

Sequence Coding sequence

Length: 1692 bp    Location: 6034967..6018444   Strand: -
>XM_004865819.1
ATGCTGGAGGAAGCGGGAGAGGTGCTGGAGAACATGCTGAAGGCATCGTGCCTGCCGCTCGGATTCATCGTCTTCCTGCCCGCCGTGTTGCTGCTCGTGGCGCCTCCGCTGCCCGCCGCCGACGCCGCGCACGAGTTCACGGTGTACCGCATGCAGCAGTACGATCTGCAGGGCCAGCCCTACGGCACACGGAACGCAGTGCTCAACACGGAGGCGCGCACGGTGGACGCGGACGTGCTGAGCCGCCGCTGCGTGCTCATGCGGCTGGTAGACTTTTCCTACGCACAGTACCAGAAGGCGCTGCGGCAGTCGGCGGGCGCTGTGGTCATCATCCTGCCGCCGGCCATGGCCGCCGTGCCCCAGGACGTCATCCGGCAATTCATGGAGATCGAGCCCGAGATGCTGGCCATGGAGACCATCGTCCCCGTGTACTTCGCCGTGGAGGACGAGGCCCTGTTGTCCATCTACGAGCAGACCCAGGCCGCCTCAGCCTCCCAGGGCTCGGCCTCAGCTGCCGAAGTGCTGCTGCACACAGCCACCGCCAACGGCTTCCAGATGGTCACCAGCGGGGTCCAGAGCAAGGCTGTGAGCGACTGGCTGATCACCAGCGTGGAGGGGCGGCTGACGGGGCTGGGCGGAGAGGACCTCCCCACCATCGTCATCGTGGCCCACTACGATGCTTTCGGGGTGGCCCCGTGGCTGTCGCTGGGCGCAGACTCCAACGGGAGCGGTGTCTCTGTGCTGCTGGAGCTGGCGCGCCTCTTCTCCCGGCTCTACACCTACAAGCGCACACACGCCGCGTACAACCTCCTGTTCTTCGCCTCCGGAGGGGGCAAGTTCAACTACCAGGGCACCAAGCGCTGGCTGGAGGACAACCTGGACCACACAGACTCCAGCCTGCTGCAGGACAACGTGGCCTTCGTCCTGTGCCTGGACACCGTGGGCCGGGGCAGCAGCCTGCACCTGCACGTGTCCAAGCCACCGAGGGAGGGAACGCTGCAGCACGCGTTCCTGCGGGAGCTTGAGACGGTGGCCGCCCACCAGTTCCCCGAGGTGCGCTTCTCCATGGTGCACAAGAAGATCAACCTGGCGGATGATGTGCTGGCCTGGGAGCACGAGCGCTTCGCCATCCGCAGGCTGCCGGCCTTCACGCTCTCCCACCTGGAGAGCCACCGCGACGGGCAGCGCAGCAGCATCATGGACGTGCGGTCCCGCGTGGACTCGAAGACACTGACGCGCAACACGAGGATCATCGCTGAGGCGCTGACACGGGTCATCTACAACCTGACAGAGAAGGGGACGCCGCCCAACATGCCAGTGTTCACGGAGCAGATGCAGGTCCAGCAGGAGCAGCTGGACTCGGTGATGGACTGGCTGACCAACCAGCCGCGGGCCGCGCAGTTGCTGGACAAGGACGGCACGTTCCTGAGCACGCTGGAGCACTTCCTGAGCCGCTACCTCAAGGACGTACGGCAGCACCACGTCAGGGCCGACAAGCGGGACCCAGAGTTCGTCTTTTATGACCAGCTGAAGCAGGTGATGAATGCATACAGGGTCAAGCCAGCCATCTTCGACCTGCTGCTGGCCGTGTGCATCGGGGCCTACCTGGCCATGGCCTACACGGCAGTGCAGCACTTTGGCCTGCTCTACAAGACCGTGCAGAGGCTGCTGGTGAAGGCCAAGGCACAGTGA

Related Sequences

XP_004865876.1 Protein

Ncln PREDICTED: nicalin isoform X1 [Heterocephalus glaber]

Length: 563 aa      View alignments
>XP_004865876.1
MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTVDADVLSRRCVLMRLVDFSYAQYQKALRQSAGAVVIILPPAMAAVPQDVIRQFMEIEPEMLAMETIVPVYFAVEDEALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGVQSKAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADSNGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGSSLHLHVSKPPREGTLQHAFLRELETVAAHQFPEVRFSMVHKKINLADDVLAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPNMPVFTEQMQVQQEQLDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVRADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIGAYLAMAYTAVQHFGLLYKTVQRLLVKAKAQ