Sequence details NCBI ID: XM_004865556.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ldlr
Gene Name low density lipoprotein receptor, transcript variant X1
Entrez Gene ID 101703463

Database interlinks

Part of NW_004624828.1 (Scaffold)

For more information consult the page for NW_004624828.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LDLR ENSCPOG00000006816 (Guinea pig)

Gene Details

low density lipoprotein receptor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006144, Guinea pig)

Protein Percentage 83.67%
CDS Percentage 86.05%
Ka/Ks Ratio 0.11167 (Ka = 0.08, Ks = 0.7167)

LDLR ENSG00000130164 (Human)

Gene Details

low density lipoprotein receptor

External Links

Gene Match (Ensembl Protein ID: ENSP00000454071, Human)

Protein Percentage 77.34%
CDS Percentage 80.26%
Ka/Ks Ratio 0.11214 (Ka = 0.128, Ks = 1.1413)

Ldlr ENSMUSG00000032193 (Mouse)

Gene Details

low density lipoprotein receptor

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034713, Mouse)

Protein Percentage 75.52%
CDS Percentage 77.66%
Ka/Ks Ratio 0.10896 (Ka = 0.1425, Ks = 1.3077)

Ldlr ENSRNOG00000009946 (Rat)

Gene Details

low density lipoprotein receptor (Ldlr), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013496, Rat)

Protein Percentage 74.45%
CDS Percentage 77.25%
Ka/Ks Ratio 0.11383 (Ka = 0.1496, Ks = 1.3146)

Genome Location

Sequence Coding sequence

Length: 2595 bp    Location: 2998440..3020149   Strand: +
Raw sequence   
>XM_004865556.1
ATGCAGTGCGCGCCGAGGATGAGGACGGCGGGCCCGGTGCTGCGCTACGGTGCGCTGCTGCTGTGCCTGGCGGCGGGGGCTGCAGAAGACAAGTGTGCAAGAAATGAATTCCAGTGCTGGGATGGGAAGTGCATCTCCTACACGTGGGTGTGTGATGGCAGGGCGGAGTGCCAGGACGGCTCTGACGAGTCCCAGGAAACGTGCATGGCTGCCACCTGCAAGCCGGGTGACTTCAGCTGTGGGGGCCGCCTGAACCGCTGCATCCCCAGCTCCTGGAGGTGTGACGGCCATGAGGACTGTAACAACGGCGCCGATGAGCAAGGCTGTCCCACCAGGACGTGTCCCGAGGACGAGTTCCACTGCCAGGATGGCCGCTGCATCTCGCAGCAGTTCCTCTGCGATGGTGACCGTGACTGCCTAGACGGTTCAGACGAGGTCACCTGCTCAGTGACCACCTGCGGCCCTGCCAACTTCCAGTGCAACTCCTCAGCCTGCATCCCCCAGCTGTGGGCCTGCGACGGCGACTCCGACTGCAGTGACGGCTCTGACGAGTGGCCACAGCGCTGCGAGGGCCGGGACACGTCGGCTGCCCAGGGGGCCAATGGCCCCTGCTCCTCCCTGGAGTTCCACTGCCGCAGCGGCGAGTGCATCCACAGCAGCTGGCACTGTGACGGTGCCCACGACTGCAAGGACAAGTCTGACGAGGAGGACTGCGTGGTGGCCACCTGCCGCCCCGATGAGTTCCAGTGTGCTGACGGCACCTGTATCCACGGCAGCCGGCAGTGTGACCAAGAGCACGACTGCAGGGACCAGAGCGACGAAGTCGGCTGCATCAACGTGACACTCTGCGAGGGTCCCAACAAGTTTAAGTGCCACAGCGGCGAGTGCATCACACTGGACAAAGTGTGCAACGCAGCCAGGGACTGTCGCGACTGGTCGGACGAGCCCCTCAAGGAGTGTGGGACCAACGAATGCTTGGACAACAATGGGGGCTGTTCCCATATCTGCAAGGACCTCAAGATCGGCTACCAGTGCTTATGCCCCAGTGGGTTCCACCTGGCGGACCAGTGGCAGTGCAAAGACATTGATGAGTGTCAGGAGCCTGACACCTGCAGCCAGCTGTGTGTGAACCTGGAGGGGAGCTACAAGTGTGAGTGTGAGGATGGCTTCCAGATGGACCCCAGCACGAAGACCTGCAAAGCCGTCGGCTCAGTCGCCTACCTGTTCTTCACCAACCGCCACGAGGTGCGGAAGATGACCCCAGACCGCAGCCAGTATGCCAGCCTCCTCTCCAACCTGAAGTATGCGGTGGCCCTGGACGCGGAGGTGGCCAGCAGCCGGCTCTATTGGTCAGACCTGTCCCACAGGAAGATCTATAGCACCCGGATCAGCGCAGCCCCGGGCTCTGCCCACGACACTGTCATTGACGGGGATCTCCAGGCCCCCGACGGGCTGGCCGTGGACTGGGTCCACCGTAACATCTACTGGACCGACTCTGTCCCCGGTACGGTGTCTGTGGCCGACACCAGGGGCGTGAAGAGGAGGACTTTGTTCCAGAGGAAAGGTTCCAAGCCCAGGGGCATCGTGGTGGACCCTGTGCACGGCTTCATGTACTGGACAGACTGGGGAACCCCCGCCAAGATCGAGAAAGGGGGCCTGAACGGCGTGGACATGTACTCGCTGGTGACAGAAGACATCGAGTGGCCCAATGGCATCACACTGGATCTCTCCAGCAGCCGCCTCTACTGGGTTGACTCCAAACTCCACTCCATCTTCAGTATCAATGTCAATGGTAGAAACAGGAAGACCATCTTGGAGGATGAAAAGCAGCTGGCCCACCCCTTCTCCTTGGCCATCTTTGAGGACAAAATATTTTGGACGGATATCATAAATGAAGCCATTTTCAGTGTCAACCGCCTCACGGGTTTGGATGTTCATTTAGTGGCTGAAAACCTGTCATCACCTGAAGACATTGTCCTGTTTCACAATGTCACACAACCGAAAGGGGTGAACTGGTGTGAGAGGACAGCCCTCCCCAACGGTGGCTGCCAGTACTTGTGTCTGCCTGCCCCACAGATCAACTCCCATTCCCCCAAGTTCACTTGTGTGTGCCCGGATGGTATGGTGCTAGCCAAGGACATGAGGAGCTGTCTCACAGAGGCTGAGCCTTCTGTGACAACTCCAGTGCACCCTACCGCCAGGCCAGAAGCCAGCAGCACAGCTGTGAGGCCAAAGCACGCAGACCAGTGGCCCGCTCCCAGCACATCTGGGCGGCCTGTGGCCACCTCCGGGCTCACCACGGCGGCGTCGGTGACCATGTCCCACCAAGTCGTGGGCAACGCCGCTGGCAGAGGGGAAAAGCCTCACAGCGTGGGGGCTCTGACCATCGTCCTTCCCATCGGGCTGGTCGCTCTCCTCTGCCTTGGTGCCTTTCTGCTGTGGAAGAACTGGCGGCTCAAGAACATCAACAGCATCAACTTTGACAACCCCGTATACCAGAAGACCACAGAAGACGAGGTGCACATCTGCCGCAGCCAGGACGGCTACATCTACCCCTCGAGGCAGAGGGTCAGCCTGGAGGATGACGTGGTGTGA

Related Sequences

XP_004865613.1 Protein

Ldlr PREDICTED: low-density lipoprotein receptor isoform X1 [Heterocephalus glaber]

Length: 864 aa      View alignments
>XP_004865613.1
MQCAPRMRTAGPVLRYGALLLCLAAGAAEDKCARNEFQCWDGKCISYTWVCDGRAECQDGSDESQETCMAATCKPGDFSCGGRLNRCIPSSWRCDGHEDCNNGADEQGCPTRTCPEDEFHCQDGRCISQQFLCDGDRDCLDGSDEVTCSVTTCGPANFQCNSSACIPQLWACDGDSDCSDGSDEWPQRCEGRDTSAAQGANGPCSSLEFHCRSGECIHSSWHCDGAHDCKDKSDEEDCVVATCRPDEFQCADGTCIHGSRQCDQEHDCRDQSDEVGCINVTLCEGPNKFKCHSGECITLDKVCNAARDCRDWSDEPLKECGTNECLDNNGGCSHICKDLKIGYQCLCPSGFHLADQWQCKDIDECQEPDTCSQLCVNLEGSYKCECEDGFQMDPSTKTCKAVGSVAYLFFTNRHEVRKMTPDRSQYASLLSNLKYAVALDAEVASSRLYWSDLSHRKIYSTRISAAPGSAHDTVIDGDLQAPDGLAVDWVHRNIYWTDSVPGTVSVADTRGVKRRTLFQRKGSKPRGIVVDPVHGFMYWTDWGTPAKIEKGGLNGVDMYSLVTEDIEWPNGITLDLSSSRLYWVDSKLHSIFSINVNGRNRKTILEDEKQLAHPFSLAIFEDKIFWTDIINEAIFSVNRLTGLDVHLVAENLSSPEDIVLFHNVTQPKGVNWCERTALPNGGCQYLCLPAPQINSHSPKFTCVCPDGMVLAKDMRSCLTEAEPSVTTPVHPTARPEASSTAVRPKHADQWPAPSTSGRPVATSGLTTAASVTMSHQVVGNAAGRGEKPHSVGALTIVLPIGLVALLCLGAFLLWKNWRLKNINSINFDNPVYQKTTEDEVHICRSQDGYIYPSRQRVSLEDDVV