Sequence details NCBI ID: XM_004865475.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col5a3
Gene Name collagen, type V, alpha 3
Entrez Gene ID 101709825

Database interlinks

Part of NW_004624828.1 (Scaffold)

For more information consult the page for NW_004624828.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL5A3 ENSCPOG00000024360 (Guinea pig)

Gene Details

collagen, type V, alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020258, Guinea pig)

Protein Percentage 85.42%
CDS Percentage 83.96%
Ka/Ks Ratio 0.24631 (Ka = 0.101, Ks = 0.41)

COL5A3 ENSG00000080573 (Human)

Gene Details

collagen, type V, alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000264828, Human)

Protein Percentage 82.95%
CDS Percentage 82.53%
Ka/Ks Ratio 0.23191 (Ka = 0.1105, Ks = 0.4766)

Col5a3 ENSMUSG00000004098 (Mouse)

Gene Details

collagen, type V, alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000004201, Mouse)

Protein Percentage 81.3%
CDS Percentage 79.11%
Ka/Ks Ratio 0.18789 (Ka = 0.1285, Ks = 0.684)

Col5a3 ENSRNOG00000020525 (Rat)

Gene Details

collagen, type V, alpha 3 (Col5a3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027897, Rat)

Protein Percentage 81.46%
CDS Percentage 79.18%
Ka/Ks Ratio 0.18266 (Ka = 0.126, Ks = 0.6897)

Genome Location

Sequence Coding sequence

Length: 5250 bp    Location: 2252660..2216185   Strand: -
Raw sequence   
>XM_004865475.1
ATGAGGAGCCGCCCGGGCCTGCGCCAGCCGCGGGCCGGCCTCTGCCTGCTCCTGGCCGCCCTGCAGCTTCTGCCCGCCACGCAGGCCGGGGACCCTGTGGATGTCCTCAAGGTCCTGGGTGTGCGTGGGGACCAGGCGGGGGTCCCCCAGGGGCCTGGCTTGTGCCCCCAGCGGGCTCCCGAGGGTGACCGGGCATTCAGAGTGGGCAAGGCCAGCACACCCAGTGTCCCCACGAGGGAGCTCTTTCCTGATGGGCACTTTCCCGTGAACTTCTCGGTGCTGGTCACTCTACGGGCCCAGGTGGCCAACCAGTCTGTCCTCCTCTCTGTCTATGACGAGAAGGGCACCCGGCAGCTGGGCCTGGCGCTAGGGCCCACGCCGGGGCTCCTCGGCCACACCTTCAGTCCCCTTCCCCAGCAGGCCAACCTGGCGGATGGCAGGTGGCATCGCCTGGCCGTCAGTGTAGATGGTGACATGGTGACACTGGTGGCTGACTGTGAGGCTCAGCCTCCTCTGTTCAGCCGAGGACCTTGGTCCATCAGCACCTCTGGCCTCACTGTGCTGGGGACCCAGGATATCGAAGAGGAGACTTTTGAGGGAGATGTCCAGGAGCTGCTGATCAGCCCAGACCCTCAGGCCGCCTTCCAGGCCTGTGACCAGTACCTGCCTGGCTGTGACAGCCCAGGTCCCACGGCCACAGGGCACCCCCAGGGTGACCCAGAGACCCCTCCTCCTCGACGAAAGGGCAAGGGAAAAGGAAAGAAAAAAGGGCAGGGTCGAAAGGGGAAAGGCAGGAAGAAGAAGAACAAGGAAAACCTGAGTCCCAGTCCCCCTCCTGGGTCCCCAGAGAGCCAGGCTGCCACTGACGTCCCCCAGCCCGAGTCACCTGTTCCAAACTCTCCTGCGACTCCCACGCCTGTGGTCCTCACCTCTGCTGTCACCCTTGGCCACAACGTCACCGTCCTAGAGGGGGAACTGGAGCCTGAAGGTGGAACCCAGCTCAGAACCCCAGACGTGGAGGCAGCCGGAGAGGAGGAAGAAGGAAGGGGCTCCACCATGGGCCCAAAATTCCGGGCAGCAGAACAGCCTTTTCAGACTGAGTTCCAGATCTTCCCTGGTGCCGGAGAGAGGGGAGAGAAGGGAGCAAAGGGTGAACCTGCTGTCATTGAACAGGGGCAGAAATTTGAGGGACCTCCAGGAGCCCCAGGACCCCAGGGGGTAGCTGGTCCCTCAGGCCCCTCTGGGCCCCCGGGATTCCCCGGGGACCGTGGTCCACCGGGCCCCGCTGGCCTCCCAGGAATCCCCGGCATGGATGGAGTCCGGGGTCCCCCGGGCACAGTGATCATGATGCCGTTCCAGTTCGCAGGCGGCTCCATGAAGGGGCCCCCAGTGTCCTTCCAGCAGGCCCAGGCCCAGGCTGTGCTGCAGCAGACCCAGCTGTCCATGAAAGGCCCCCCTGGCCCAGTGGGGTTCACAGGACGCCCAGGGCCTGTGGGTCTCCCAGGATACCCAGGACTGAAAGGTGAACCAGGGGAAACAGGGCCACAGGGTCCCCGAGGGCTGCAGGGACCTCCTGGGCCCCCTGGCAGAGAGGGCAAGCGGGGCCGCTCCGGAGCAGATGGGGCGCGGGGCATGCCGGGAGACACAGGGCCCAAGGGCGACCGGGGCTTTGACGGCCTCCCGGGGGTGCCCGGAGAGAAGGGACAGAGGGGTGACTTTGGCCTCGTGGGCCAACCAGGCCCCCCGGGAGAGGATGGCCGCAAAGGAGTAGAGGGGCCACCGGGGCCCACTGGCCAGGCTGGGGAGCCGGGCCCTCGAGGTCTGATTGGCCCCCGAGGCTCCCCTGGCCCCTTGGGACGCCTGGGTGTCACCGGAAGTGATGGAGCTCCTGGTGCCAAAGGCAATGTGGGTCCGCCTGGAGATCCAGGGCCACCCGGACAGCAGGGAAACCACGGGGCCCAGGGAATTCCTGGCCCCCAGGGACCCATCGGCAACCCGGGGGTGAAGGGTCCCCCCGGAAACCCAGGCATCCCAGGTTCCCCAGGAGCTGATGGCCCTCTGGGTCACCCAGGCCAGGAGGGTCCCACAGGAGAGAAAGGGGCCCAGGGACCACCAGGCTCGGCAGGGCCTCCAGGCTACCCTGGACCCCGGGGCGTGAAGGGTACCTCAGGCAATCGAGGCCTCCAAGGAGAAAAAGGAGAGAGGGGAGAGGACGGCTTCCCTGGCTTCAAGGGCGACGTGGGCCCCAAAGGCGATTGGGGACAACCAGGACCCCCTGGCCCCCGAGGAGAGGAGGGTCCTGAGGGGCTGAAGGGGCCGGAGGGGCTGGCGGGCGAGGAGGGGCCCCTGGGCACAGCTGGGGAGAAGGGCAATCTTGGTGTGCCCGGTCTCCCAGGATACCCAGGACGTCCAGGACCTAAGGGATCTATTGGATTTCCCGGGCCCTTGGGACCATTAGGAGAGAAGGGAAAGCGGGGCAAGGCAGGCCAGCAGGGGCAGGAAGGAGAGAGAGGACCACCTGGCTCTCGTGGAGAGAGAGGGCAGCCAGGGGCAACAGGACAGCCAGGCCCCAAGGGTGATGTGGGCCAGGACGGGTCCCCAGGAATCCCTGGAGAAAAGGGCCTCCCTGGACTGCAGGGTCCCCTAGGATTCCCTGGGCCGAAGGGCCCCCCTGGTCCCCAGGGAAAAGAGGGGGCACCAGGGCACCCTGGACAGAGAGGAGAATTGGGCTTCCAAGGTCAGACGGGCCCACCTGGACCAGCAGGTGTCTTGGGTCCTCAGGGAAAGATAGGGGATGCTGGACCCCTGGGTGAGAGGGGCCACCCCGGCCCCCCTGGGCCTCCTGGTGAACATGGGCTCCCGGGCCCGGAAGGCGGAGAAGGAGCCAAGGGGGAGCCAGGACCCTTAGGACCCACTGGGAAGGAGGGGCCGCCTGGACTGAGAGGCCCCACTGGGCCCAAAGGAGGCCCTGGGGACCCCGGACCCCCTGGATTGAAGGGCGACAAAGGTCCCCCTGGTCCTGTTGGGGCCAATGGCTCCCCTGGCGAGCGGGGTCCCCTGGGCCCATCAGGCGGCATTGGGCTCCCTGGCCAAAGTGGTAGCCAAGGCCCGGCGGGTCCTGCGGGTGAGAAGGGGTCCCCGGGAGAACGTGGCGCACCGGGCCCCACTGGAAAGGATGGGGTCCTGGGGCCCCCTGGGCTTCAGGGACCCCCTGGAGCTGCTGGGCCTGTGGGCGAAGAGGGTGACAAGGGGGAAGTGGGTGCCCCCGGCCACAAGGGCAGCAGAGGCAACAAGGGAGATGCGGGTCCACCTGGACCGACAGGCATAAGGGGTCCCTCAGGACACCCAGGAACCCCGGGAGCTGATGGAGCTCAGGGACGCCGGGGACCCCCAGGCCTCTTTGGGCAGAAAGGAGATGATGGAGTCCGAGGCTTCACGGGGGTGAACGGGCCCCCTGGCCCTCAAGGATTGCCAGGCCCTCCCGGAGAAAAGGGGGAGGTTGGAGACGTGGGGTCTATGGGTCCCCATGGAGCCCCAGGCCCTCGAGGTCCCCATGGCCCCAGTGGATCAGAGGGTCCACCAGGGCTTCCTGGGGGTGTTGGTCAGCCAGGCGCCGTGGGTGAGAAGGGTGAGCCAGGTGATGCTGGGGACCCTGGACCCCCAGGACCCCCAGGAATTCATGGGCCCAAAGGTGAAGTTGGTGAAAAGGGAGACTCAGGCCCATCTGGGGCTGCTGGACCCCCAGGCAAGAAAGGTCCTCCTGGAGAGGATGGACCCAAAGGGAACATGGGCCCTACAGGGATGGCTGGAGATCTAGGACCCCCAGGAGACCCTGGGCCGGTGGTGAGTGGAACAGATGGCTCTCCGGGGGCAAAGGGAGACCCTGGTGATGTTGGGGCCCCGGGGCCGCCTGGTGCTTCTGGGGAACCTGGCACCCCGGGACCCCCTGGAAAGAGGGGTCCCTCAGGCCGCCTGGGTCAAGAAGGCAGAGAAGGGGCCAAAGGTGCCAAGGGTGAGCCGGGTCCTGATGGGCCCCCAGGGAGGACAGGCCCCGTGGGGGCGCAAGGGCCCCCTGGACGTGCAGGGCCCGAGGGCCTTCAGGGGATCCCCGGCCCTGTGGGAGAGCCAGGCCTTCTGGGACCCCCGGGCCTGATGGGCCCTCCAGGCCCCCTGGGCCCCCCTGGCCTCCCAGGGCTGAAGGGAGACGCTGGCCCAAAGGGGGAGAAGGGCCATATCGGACTGCAAGGCCTCATCGGTCCCCCTGGGGAGGCCGGCGAGAAGGGGGACCGGGGCCTTTCAGGTGTGCCGGGCTCCCATGGCCTCCAGGGAGACCCTGGTTCCCCTGGTCCTAAGGGCTCTGTGGGCCACCCTGGGGCCCCTGGCGTGGTGGGCCCTGTGGGACTGAAAGGCTCCAAAGGGTCCCCGGGCTCCCTTGGTCCTCCTGGCGACACTGGGCCCCCAGGTCCTCCCGGCCCCCCGGGACCCCCGGGCGAGTTCCCGGGGCTGCGCAGCCGCAGACGCCGCCGCCGCGCAGTCCCCGAGGGCGGCCTGGAGGAGGTTCTGGCCTCGCTGGCGTCGCTGAGCGCAGAGCTGGAGCAGCTGCAGCGACCTCCGGGCACCGCCGAGCGCCCGGGCCTCGTGTGCCACGAGCTGCAGCGAAATCATCCGCACCTGCCCGACGGCGATTACTGGATCGACCCCAACCAGGGCTGTGCGCGGGATGCGCTCAGGGTTTTCTGCAACTTCACGGCAGGAGGCCAGACCTGCCTGTACCCCGACAAGAGATTTGAGACGGTGAAGCTGGCCTCCTGGTCCAAGGAGAAGCCCGGAAGCTGGTACAGCACCTTTCGGCGGGGGAAGAAGTTCTTCTACGTGGATGCCGACGGGGCCCCAGTGAACGTGGTTCAGCTGAACTTCCTGAAACTGCTGAGTGCCACGGCCGAGCAGCGCTTCACCTTCTCCTGCCAGAACTCAGCCGCGTGGCTGGATGAAGCTGCAGGCAACCACGGCCGCTCCGTCCGCTTCCTGGGGACCAATGGCGAGGAGGTGTCTGTCAACCAGACAGTGGCGGCCACCGTTGAGGTCCCCTACGATGGCTGTCGGTTTCGAAAGGGACAGGCGAAGACTGTCCTGCAACTTCGCTCTTCCTGGCCGGGCTTTCTGCCCCTGCTGGATGTGGCAGCCATGGACTTCGGCCAGGCAAACCAGAAGTTTGGGTTTGAACTGGGCCCTGTCTGCTTCAGCAGCTGA

Related Sequences

XP_004865532.1 Protein

Col5a3 PREDICTED: collagen alpha-3(V) chain [Heterocephalus glaber]

Length: 1749 aa      View alignments
>XP_004865532.1
MRSRPGLRQPRAGLCLLLAALQLLPATQAGDPVDVLKVLGVRGDQAGVPQGPGLCPQRAPEGDRAFRVGKASTPSVPTRELFPDGHFPVNFSVLVTLRAQVANQSVLLSVYDEKGTRQLGLALGPTPGLLGHTFSPLPQQANLADGRWHRLAVSVDGDMVTLVADCEAQPPLFSRGPWSISTSGLTVLGTQDIEEETFEGDVQELLISPDPQAAFQACDQYLPGCDSPGPTATGHPQGDPETPPPRRKGKGKGKKKGQGRKGKGRKKKNKENLSPSPPPGSPESQAATDVPQPESPVPNSPATPTPVVLTSAVTLGHNVTVLEGELEPEGGTQLRTPDVEAAGEEEEGRGSTMGPKFRAAEQPFQTEFQIFPGAGERGEKGAKGEPAVIEQGQKFEGPPGAPGPQGVAGPSGPSGPPGFPGDRGPPGPAGLPGIPGMDGVRGPPGTVIMMPFQFAGGSMKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGFTGRPGPVGLPGYPGLKGEPGETGPQGPRGLQGPPGPPGREGKRGRSGADGARGMPGDTGPKGDRGFDGLPGVPGEKGQRGDFGLVGQPGPPGEDGRKGVEGPPGPTGQAGEPGPRGLIGPRGSPGPLGRLGVTGSDGAPGAKGNVGPPGDPGPPGQQGNHGAQGIPGPQGPIGNPGVKGPPGNPGIPGSPGADGPLGHPGQEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGERGEDGFPGFKGDVGPKGDWGQPGPPGPRGEEGPEGLKGPEGLAGEEGPLGTAGEKGNLGVPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQQGQEGERGPPGSRGERGQPGATGQPGPKGDVGQDGSPGIPGEKGLPGLQGPLGFPGPKGPPGPQGKEGAPGHPGQRGELGFQGQTGPPGPAGVLGPQGKIGDAGPLGERGHPGPPGPPGEHGLPGPEGGEGAKGEPGPLGPTGKEGPPGLRGPTGPKGGPGDPGPPGLKGDKGPPGPVGANGSPGERGPLGPSGGIGLPGQSGSQGPAGPAGEKGSPGERGAPGPTGKDGVLGPPGLQGPPGAAGPVGEEGDKGEVGAPGHKGSRGNKGDAGPPGPTGIRGPSGHPGTPGADGAQGRRGPPGLFGQKGDDGVRGFTGVNGPPGPQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPHGPSGSEGPPGLPGGVGQPGAVGEKGEPGDAGDPGPPGPPGIHGPKGEVGEKGDSGPSGAAGPPGKKGPPGEDGPKGNMGPTGMAGDLGPPGDPGPVVSGTDGSPGAKGDPGDVGAPGPPGASGEPGTPGPPGKRGPSGRLGQEGREGAKGAKGEPGPDGPPGRTGPVGAQGPPGRAGPEGLQGIPGPVGEPGLLGPPGLMGPPGPLGPPGLPGLKGDAGPKGEKGHIGLQGLIGPPGEAGEKGDRGLSGVPGSHGLQGDPGSPGPKGSVGHPGAPGVVGPVGLKGSKGSPGSLGPPGDTGPPGPPGPPGPPGEFPGLRSRRRRRRAVPEGGLEEVLASLASLSAELEQLQRPPGTAERPGLVCHELQRNHPHLPDGDYWIDPNQGCARDALRVFCNFTAGGQTCLYPDKRFETVKLASWSKEKPGSWYSTFRRGKKFFYVDADGAPVNVVQLNFLKLLSATAEQRFTFSCQNSAAWLDEAAGNHGRSVRFLGTNGEEVSVNQTVAATVEVPYDGCRFRKGQAKTVLQLRSSWPGFLPLLDVAAMDFGQANQKFGFELGPVCFSS