| Gene Symbol | Smarca1 |
|---|---|
| Gene Name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, transcript variant X4 |
| Entrez Gene ID | 101720942 |
For more information consult the page for NW_004624797.1 (Scaffold)
The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
| Protein Percentage | 97.11% |
|---|---|
| CDS Percentage | 95.05% |
| Ka/Ks Ratio | 0.08524 (Ka = 0.0161, Ks = 0.1888) |
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
| Protein Percentage | 97.12% |
|---|---|
| CDS Percentage | 94.31% |
| Ka/Ks Ratio | 0.0559 (Ka = 0.013, Ks = 0.2319) |
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
| Protein Percentage | 94.91% |
|---|---|
| CDS Percentage | 91.13% |
| Ka/Ks Ratio | 0.05889 (Ka = 0.0237, Ks = 0.4027) |
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (Smarca1), mRNA
| Protein Percentage | 94.24% |
|---|---|
| CDS Percentage | 90.52% |
| Ka/Ks Ratio | 0.06908 (Ka = 0.0293, Ks = 0.4245) |
>XM_004860030.1 ATGGAGCCGGACACCGCCGCAGTGGCAGCCACCGTGGCAGCTGCCGACGCGACCGCCACAATCGTGGTCATAGAGGACGAGCAGCCGGGCCCGTCCACCTCTAAGGAGGAGGGAGCAGCCGCCGCGGCCACCGAAGCCACCGCGACCACGGAGAAGGGCGAGAAGAAGAAGGAGAAAAACATTTCTCCGTTTCAACTCAAACTTGCTACTAAAGCTTCTAAATCTGAAAAGGAAATGGACCCAGAATATGAAGAAAAAATGAAAGCAGATCGAGCAAAGAGATTTGAATTTTTACTGAAGCAGACAGAACTTTTTGCACATTTCATTCAACCTTCAGCGCAGAAATCTCCAACATTTCCTCTGAGCATGAAATTGGGACGTCCTCGAATAAAGAAAGATGAAAAGCAGAGCTTAATTTCTGCTGGAGACTATCGCCACCGACGCACGGAACAAGAAGAAGATGAAGAGCTACTGTTAGAGAGTCGAAAAACTTCGAGTGTGTGTGTTAGATTTGAGGTGTCCCCTTCTTATGTAAAAGGAGGAGCCCTGAGAGATTACCAGATTCGAGGACTGAACTGGTTGATCTCCTTGTATGAAAATGGAGTCAATGGTATTTTGGCTGATGAAATGGGTCTCGGCAAGACTTTGCAAACAATTGCTTTGCTTGGTTACCTGAAACACTACCGAAACATTCCTGGACCTCACATGGTTTTGGTTCCAAAGTCTACTTTACACAACTGGATGAATGAATTTAAACGATGGGTTCCATCTCTCCGTGTTATTTGTTTTGTTGGAGACAAAGATGCGAGAGCTGCTTTTATTTGTGATGAAATGATTCCAGGAGAGTGGGATGTCTGTGTTACTTCTTATGAGATGGTAATTAAAGAAAAATCTGTATTTAAAAAGTTTCATTGGCGATATGTAGTCATTGATGAAGCGCACAGAATTAAAAATGAAAAATCTAAGCTTTCAGAAATTGTTCGTGAGTTCAAGTCGACTAACCGCTTACTTCTAACTGGAACACCTTTGCAGAATAATCTCCATGAACTCTGGGCATTACTCAACTTTTTATTGCCTGATGTCTTTAATTCTTCAGATGACTTTGATTCATGGTTTGACACAAAAAATTGCTTTGGTGATCAGAAACTTGTGGAAAGACTTCATGCAGTTTTAAAACCATTTTTGTTACGTCGTATAAAAACTGATGTAGAGAGGAGTCTGCCTCCTAAAAAGGAGATAAAGATTTACTTGGGACTGAGTAAGATGCAACGAGAATGGTATACAAAAATCCTGATGAAAGATATTGATGTTTTAAACTCTGCTGGCAAGATGGACAAGATGCGACTCTTAAACATTCTCATGCAGCTTCGAAAGTGTTGTAATCATCCATATTTGTTTGATGGTGCTGAACCTGGTCCACCTTATACCACAGATGAGCATATTGTCAGCAACAGTGGCAAAATGGTGGTTTTGGATAAGCTATTGTCAAGACTCAAAGAACAGGGTTCAAGGGTTCTCATTTTCAGCCAGATGACTCGCTTGCTAGACATTTTGGAAGATTATTGTATGTGGCGTGGTTATGAGTATTGTCGGCTGGATGGACAAACCCCACATGAAGAAAGAGAGGAGGCAATAGAGGCCTTTAATGTTCCTAACAGTAGCAAATTCATCTTTATGCTGAGTACCAGGGCTGGAGGTCTTGGAATTAACTTAGCAAGTGCTGATGTGGTCATCCTGTATGATTCAGACTGGAATCCACAGGTTGATCTACAAGCTATGGATCGAGCACATCGTATTGGCCAGAAGAAGCCAGTACGTGTATTCCGTCTCATCACTGACGACACTGTTGAAGAAAGAATTGTAGAGAGAGCTGAGATAAAACTGAGACTTGATTCAATTGTTATACAACAAGGAAGACTCATTGATCAACAATCTAACAAGCTGGCAAAAGAGGAAATGTTACAAATGATACGTCATGGAGCCACCCATGTTTTTGCTTCTAAAGAAACTGAGCTGACAGATGAAGACATTACAACGATTCTGGAAAGAGGGGAAAAGAAGACTGCAGAGATGAATGAACGTTTGCATAAAATGGGAGAATCTTCTCTAAGAAATTTTAGAATGGACATTGAACAAAGTTTGTACAAGTTTGAAGGAGAGGATTATAGAGAAAAACAGAAGCTTGGTATGGTGGAATGGATTGAACCTCCTAAACGAGAACGCAAAGCAAACTACGCAGTGGATGCCTACTTTAGAGAGGCTTTGCGTGTCAGTGAGCCAAAGATTCCAAAGGCTCCACGTCCTCCAAAACAGCCAAATGTTCAGGATTTTCAATTTTTCCCACCACGTTTATTTGAGCTCCTGGAAAAGGAAATTCTGTATTATCGGAAGACAATAGGTTATAAGGTGCCAAGGAATCCTGAGATACCGAATCCAGCTCTGGTTCAAAGAGAAGAGCAAAAAAAGATTGATGGAGCCGAACCTCTTACATTAGAAGAGACAGAAGAAAAGGAAAAACTTCTCACACAAGGTTTCACAAACTGGACTAAGCGAGATTTTAACCAGTTTATTAAAGCTAATGAGAAGTATGGAAGAGATGACATTGATAATATTGCTAGAGAGGTAGAGGGCAAATCCCCTGAGGAGGTCATGGAATACTCAGCTGTATTTTGGGAACGTTGCAGTGAACTACAGGACATTGAGAAAATTATGGCTCAAATTGAACGTGGAGAAGCAAGAATTCAACGAAGGATCAGTATCAAGAAAGCCCTGGATGCCAAAATCGCAAGATACAAGGCTCCATTTCATCAGTTGCGTATTCAATATGGAACCAGCAAAGGAAAGAACTATACTGAGGAAGAAGATAGATTCTTGATTTGTATGTTACACAAAATGGGCTTTGATAGAGAAAATGTGTATGAAGAATTACGGCAGTGTGTACGGAATGCTCCCCAGTTTAGATTTGACTGGTTTATCAAGTCTAGAACTGCCATGGAATTCCAGAGACGCTGTAACACTTTAATTTCATTGATTGAGAAAGAAAATATGGAAATTGAGGAAAGAGAGAGAGCAGAAAAGAAGAAACGGGCAACTAAAACTCCAATGGTAAAATTTTCAGCATTTTCCTAA
Smarca1 PREDICTED: probable global transcription activator SNF2L1 isoform X4 [Heterocephalus glaber]
Length: 1042 aa View alignments>XP_004860087.1 MEPDTAAVAATVAAADATATIVVIEDEQPGPSTSKEEGAAAAATEATATTEKGEKKKEKNISPFQLKLATKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTFPLSMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLLESRKTSSVCVRFEVSPSYVKGGALRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFICDEMIPGEWDVCVTSYEMVIKEKSVFKKFHWRYVVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSDDFDSWFDTKNCFGDQKLVERLHAVLKPFLLRRIKTDVERSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLSRLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDDTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKETELTDEDITTILERGEKKTAEMNERLHKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPEIPNPALVQREEQKKIDGAEPLTLEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCSELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMVKFSAFS