Details from NCBI annotation

Gene Symbol Lsm1
Gene Name LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae), transcript variant X2
Entrez Gene ID 101708340

Database interlinks

Part of NW_004624780.1 (Scaffold)

For more information consult the page for NW_004624780.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LSM1 ENSCPOG00000020053 (Guinea pig)

Gene Details

LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018913, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 94.74%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.2172)

LSM1 ENSG00000175324 (Human)

Gene Details

LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000310596, Human)

Protein Percentage 100.0%
CDS Percentage 93.98%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.2204)

Lsm1 ENSMUSG00000037296 (Mouse)

Gene Details

LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000041022, Mouse)

Protein Percentage 97.74%
CDS Percentage 91.23%
Ka/Ks Ratio 0.03285 (Ka = 0.0113, Ks = 0.3438)

Lsm1 ENSRNOG00000015375 (Rat)

Gene Details

LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (Lsm1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020721, Rat)

Protein Percentage 97.74%
CDS Percentage 91.23%
Ka/Ks Ratio 0.03089 (Ka = 0.011, Ks = 0.3556)

Genome Location

Sequence Coding sequence

Length: 402 bp    Location: 5473127..5483283   Strand: +
>XM_004855368.1
ATGAACTATATGCCCGGCACCGCCAGCCTCATCGAGGACATCGACAAAAAACATTTGGTCCTGCTTCGAGATGGAAGGACACTTATAGGCTTTTTAAGAAGCATTGATCAATTTGCTAACTTAGTGCTACATCAGACTGTGGAGCGTATTCATGTGGGGAAAAAATACGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACTAGGAGAAATAGACTTGGAGAAGGAGAGCGACACGCCCCTCCAGCAAGTGTCCATTGAGGAGATCCTGGAAGAGCAGAGGGTGGAGCAGCAGACCAAGCTGGAAGCAGAGAAGCTGAAAGTCCAGGCCTTGAAGGATCGGGGTCTTTCCATTCCTCGAGCAGATACTCTTGATGAGTATTAG

Related Sequences

XP_004855425.1 Protein

Lsm1 PREDICTED: U6 snRNA-associated Sm-like protein LSm1 isoform X2 [Heterocephalus glaber]

Length: 133 aa      View alignments
>XP_004855425.1
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSIPRADTLDEY