Sequence details NCBI ID: XM_004853397.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tnn
Gene Name tenascin N, transcript variant X1
Entrez Gene ID 101718352

Database interlinks

Part of NW_004624771.1 (Scaffold)

For more information consult the page for NW_004624771.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TNN ENSCPOG00000012246 (Guinea pig)

Gene Details

tenascin N

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011015, Guinea pig)

Protein Percentage 86.84%
CDS Percentage 88.61%
Ka/Ks Ratio 0.22407 (Ka = 0.0754, Ks = 0.3364)

TNN ENSG00000120332 (Human)

Gene Details

tenascin N

External Links

Gene Match (Ensembl Protein ID: ENSP00000239462, Human)

Protein Percentage 81.9%
CDS Percentage 86.03%
Ka/Ks Ratio 0.20752 (Ka = 0.0944, Ks = 0.4548)

Tnn ENSMUSG00000026725 (Mouse)

Gene Details

tenascin N

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000039452, Mouse)

Protein Percentage 86.47%
CDS Percentage 85.81%
Ka/Ks Ratio 0.12403 (Ka = 0.0717, Ks = 0.5781)

Tnn ENSRNOG00000002548 (Rat)

Gene Details

tenascin N (Tnn), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000003452, Rat)

Protein Percentage 86.1%
CDS Percentage 85.39%
Ka/Ks Ratio 0.12287 (Ka = 0.0736, Ks = 0.5989)

Genome Location

Sequence Coding sequence

Length: 4686 bp    Location: 6939224..6872964   Strand: -
Raw sequence   
>XM_004853397.1
ATGGGTCTCCAGGGCACTTTCGGCTTCCCCTTGGGGCTCCTGCTGGGCTCTGTGCTCCTGGTGACTTCGGCCCCAGCCACTCCGGAGCCTCCTGGCTGCAGCAACAAGGACCAACAGGTGACTGTCAGCCACACCTACAAGATTGAGGTGCCCAAGTCTACCCTGGTGCAGGTGGAGGCCGATCCGCAGTCCCTCAGTGATGATGGGACTTCACTCTTGGCCATGGCGGAGGAGGGAGAGGAGCAGAATCTCATCTTCAGGCACAACATTCGCCTCCAGACACCGCAGAAGGGCTGCGACTTGTCAGATAGTGTCCAGGACCTCCTGGCCCGGGTGAAGAAACTAGAGGAAGAGATGGCAGAGCTGAAGGAGCAGTGTAATGTCCAGCGCTGCTGCCAAGGCGCTGCTGATCTGAGCCGCCACTGCAGCGGCCACGGCACCTTCTCCCCTGACACCTGCAGCTGCCACTGCGAGCAGGGCTGGGAGGGCGCGGACTGCGAGCTGCCCAGCTGCCCCGGGGCGTGCAGCGGCCACGGGCGCTGCGTGGATGGGCGCTGCGTGTGCGACGCGCCCTACGTGGGCCCCGACTGCGCCTACCCCGCCTGTCCGCAGGACTGCAGCGGCCACGGCGTGTGCGTGCGCGGCGTCTGCCAGTGCCAGGAAGACTTCACGTCGGAGGACTGCAGCGAGCAGCGCTGTCCCGGCGACTGCAGCGGCCACGGCTTCTGCGACACGGGCGAGTGTTACTGCGAGTTGGGCTTCACGGGTCCCGACTGCTCCCAGGTCATCCCCCCTCAGGGCCTGCAGCTGCTGAAGAGCACCGAGAATTCCCTGCTGGTGGGCTGGGAGCCCTCCAGCGACGTGGACCACTACCTCCTCAGCTACTATCCCATGGGCAAGGAGCGCTCTTCCAAGCAGATCCAGGTGCCCAAGGAGCAGCACACCTATGAGATTCCTGGATTGCTGCCTGGAACCAAGTACGTAGTCACCCTGCGCAATGTGAAGAAAGACATTCACAGCAGCCCGCAGCACCTGGTTGCCACCACAGATCTTGCTGTGGTTGGCACTGCCTGGGTGACAGAAGAGACTGAGAACTCCCTCGATGTGGAGTGGGAGAATCCCCCAACTGAGGTAGACTACTACAAGCTGCGGTATGGCCCATTGACAGGGCACGAGGTGGCTGAGGTCACTGTACCTAGGAGCCGTGAACCCAAGAGCCGATATGACATCACTGGTCTGCAGCCTGGGACGGACTATAAGATCACAGTTGTCCCCATAAGAGGAGACTTGGAAGGCAAGCCCATTCTCCTGAATGGCAGGACAGAAATTGATGGTCCAACCAATGTGGTCACTAATCAAGTGACAGAAGACACAGCAGTAGTCTCCTGGAACCCAGTGAAGGCTGACATAGACAAATATGTGGTGCGCTACATCTCCCCTGATGGAGAGACTAAAGAGAGAGCAGTACCCAGGGACCAGAGCAGCACCACCCTGACTGGCCTGAAGCCAGGAGAGACGTATAAAGTCTATGTGTGGGCTGAGAGGGGCAACCAAGGAAGCAAGAAAGCCGACACCAAGGCCCTCACAGAAATTGATAGCCCAGCAAACCTGGTAACTGATCGGGTAACAGAAAATACACTCACTGTCTCCTGGGACCCAGTGGAGGCTGAAATTGACAGGTATGTGGTAAGCTACACCTCTGCTGATGGAGAGACCAGGGAGATTCCAGTGGCTAAGGAGCAGACCAGCACTGACCTCATCGGCCTGAGCCCAGGTGTGGAGTACAAAGTCTACGTGTGGGCCCAGAAGGGGGACAGGGAGAGCAAGAAGGCCAACACCCAGGCCCCTACAGACATTGACAGTCCTAAAAATCTGGTGACTGACAAGGTGACAGAAAATATGGTCACTGTCTCCTGGGACCCTGTGCAGGCCCCCATCGATAGGTATGTGGTGAGCTATACCTCTGCTGATGGAGTGACCAAGGAGATTCCAGTAGGGAAGGATCAGAGGAGCACTGTTCTGACAGGTCTGAAGCCAGGGATGGAGTATAAATTTCATGTGTGGGCCCAGAAGGGGACCCAGGAAAGCAGGAAGGCTGACACCAAGGCCCCTACAGACATTGACAGCCCCAAAAACCTGGTGACTGACCAGGTGACAGAAAATACTGCCACTGTCTCTTGGGACCCAGTAGAGGCCGACATTGACAGGTATATGGTGCGCTACACCTCTGCTGATGGAGAGACCAAGGAGGTTCCAGTGAGGAAGGACCAGAGGAGCACCATCCTGAGAGGCCTGAGGCCAGGTGTGGAGTACAAGGTGGACGTGTGGGCCCAGAAGGGGGCCCGGGAGAGCAGGAAGGCCAACACCAAGGCCCCCACAGACATTGACAGCCCCAAAAACCTGGTGACTGACCAGGTGACAGAGAACACTGCCACTGTCTCCTGGGACCCAGTAGAGGCCGACATTGACAGGTATGTGGTGCGCTACACCTCTGCCGACGGAGAGACCAGGGAATTTCTGGTGGGGAAGGACCAGAGCAGCACCGTCCTGACAGGCCTGAGGCCAGGTGTGGAGTACGAGGTGGACGTGTGGGCCCAGAAGGGGGCCCGGGAGAGCAGGAAGGCCAACTCCAAGGCCCCCACAGATATTGACAGCCCCCAAAACCTGGTGACAGACCAAGTAACAGAGAACACTGCCACTGTCTCCTGGGACCCAGTGGAGGCTGAGATTGATAGGTATGTGGTGCGCTACACCTCTGCTGATGGAGAGACCAGGGAGATTCCTGTGAGGAAAGAGCAGAGGAGCACCGTCCTGACAGGCCTGAGGCCAGGTGTGGAGTACAAGGTGGACGTGTGGGCCCGGAAGGGGACCCAGGAGAGCAGGAAGGCCAACACCAAGGCCCCCACAGACATTGACAGCCCCAAAAACCTGGTGACTGACCAGGTGACAGAGAACACTGCCACTGTGTCCTGGGACCCAGTGAAGGCCGACATTGACAGGTATGTGGTGCGCTACACCTCTGCTGACGGAGAGACCAAGGAGTTTCTGTTGGGGAAGGACCAGAGCAGCACCGTCCTGACAGGCCTGAGGCCAGGTGTGGAGTACAAGGTGGACGTGTGGGCCCAGAAGGGGGCCCGGGAGAGCAGGAAGGCCAACACCAAGGCCCCCACAGACATTGACAGCCCCAAAAACCTGGTAACCAACCAGGTGACAGAGAACACAGCCACTGTCTCCTGGGACCCGGTGCAGGCTGACATTGACAGGTATGTGGTGCGCTACACCTCTGCCGATGGAGAAACCAGGGAGATTCCTGTGAGGAAGGGGAAGACCAGCACCGTCCTGACTGGCCTGAGGCCCGGGGTTGACTACACCATCCATGTGTGGGCCCAGAAGGGCACCCGGGAGAGCAAGAAGGCCAACACCAAGGCCCCCACAGAAATTGACAGCCCCAAAAACCTGGTGACCAACCGGGTGACAGAAACTACAGCCACCATCTCCTGGGACCCAGTGAGAGCCGCCATTGACAGGTACATGGTGCGCTACACATCTGCGGATGGAGAGACAAAGGAGATTCCAGTGTCAAAGGAGCAAAGCAGCACCATCCTGACAGGCCTGAAGCCTGGTGTGGCATACACAGTTCAAGTGTGGGCCGTGAAAGGGGCTCGCGAGAGCAAGAAGGTCAGCACCAAGGCCCTGACAGAAATAGATCCTCCCAAAAACTTTCGTCCATTCGGTGTGACACATTCTGGTGGGGCATTGACCTGGATGCCCCCCTCTGCTCAGATTGATGGGTACATTCTGACCTACCAGTTCCCCAATGGCACCGTAAAGGAGGTGCGGCTTGGAAGAGGCGAGCAGAGGTTCGAGTTGCAAGGCCTTGAGCAGGGCATCACCTACCCTGCCTCCTTGGTTGCTTTTAAGGGTGATCACAGGAGCAGGAGTGTATCCACCTCCCTCTCCACAGTTGATGCTCGTTTTCCACACCCCTCGGACTGCAGTCAGATTCAGCAGAACAGCGATGCCGCCAGTGGCCTCTACACCATCTACCTGAATGGTGATGTCAACCGGCCCCTGAAGGTTTACTGTGACATGGACACAGACGGAGGCGGCTGGATTGTCTTCCAGAGACGGAACACTGGGCAGTTGGATTTCTTCAAGCGCTGGCGGAGCTATGTGGAAGGCTTCGGGGACCCTATGCAGGAGTTCTGGCTTGGACTTGATAAGCTACACAATCTTACTAGTGGCACCCCTACCCGGTATGAAGTCAGAGTGGATTTACAGACCTCCAATGAATCTGCCTACGCCGTATATGATTTATTCCAAGTGGCCTCCCCCAAGGAGCGGTATAAGCTGACAGTTGGGAAATACAGAGGCACAGCAGGGGATGCTCTTACATACCACAATGGATGGAAGTTTACAACTTTTGACAGAGACAATGATATCGCCCTCAGCAACTGTGCTCTGACGCATCATGGCGGCTGGTGGTATAAGAACTGCCACTTGGCCAACCCTAATGGCAAATACGGGGAGACTAAGCATAGTGAGGGGGTGAACTGGAAGCCGTGGAAAGGACATGAATTCTCCATCCCTTACGTGGAGTTGAAAATTCGCCCAAATGGCTACAGCAGAGAGCGTTTCCATGGCAGAAAGAAGCGGACTTTGGGAGGAAAGACGAGAATGTTCTGA

Related Sequences

XP_004853454.1 Protein

Tnn PREDICTED: tenascin-N isoform X1 [Heterocephalus glaber]

Length: 1561 aa      View alignments
>XP_004853454.1
MGLQGTFGFPLGLLLGSVLLVTSAPATPEPPGCSNKDQQVTVSHTYKIEVPKSTLVQVEADPQSLSDDGTSLLAMAEEGEEQNLIFRHNIRLQTPQKGCDLSDSVQDLLARVKKLEEEMAELKEQCNVQRCCQGAADLSRHCSGHGTFSPDTCSCHCEQGWEGADCELPSCPGACSGHGRCVDGRCVCDAPYVGPDCAYPACPQDCSGHGVCVRGVCQCQEDFTSEDCSEQRCPGDCSGHGFCDTGECYCELGFTGPDCSQVIPPQGLQLLKSTENSLLVGWEPSSDVDHYLLSYYPMGKERSSKQIQVPKEQHTYEIPGLLPGTKYVVTLRNVKKDIHSSPQHLVATTDLAVVGTAWVTEETENSLDVEWENPPTEVDYYKLRYGPLTGHEVAEVTVPRSREPKSRYDITGLQPGTDYKITVVPIRGDLEGKPILLNGRTEIDGPTNVVTNQVTEDTAVVSWNPVKADIDKYVVRYISPDGETKERAVPRDQSSTTLTGLKPGETYKVYVWAERGNQGSKKADTKALTEIDSPANLVTDRVTENTLTVSWDPVEAEIDRYVVSYTSADGETREIPVAKEQTSTDLIGLSPGVEYKVYVWAQKGDRESKKANTQAPTDIDSPKNLVTDKVTENMVTVSWDPVQAPIDRYVVSYTSADGVTKEIPVGKDQRSTVLTGLKPGMEYKFHVWAQKGTQESRKADTKAPTDIDSPKNLVTDQVTENTATVSWDPVEADIDRYMVRYTSADGETKEVPVRKDQRSTILRGLRPGVEYKVDVWAQKGARESRKANTKAPTDIDSPKNLVTDQVTENTATVSWDPVEADIDRYVVRYTSADGETREFLVGKDQSSTVLTGLRPGVEYEVDVWAQKGARESRKANSKAPTDIDSPQNLVTDQVTENTATVSWDPVEAEIDRYVVRYTSADGETREIPVRKEQRSTVLTGLRPGVEYKVDVWARKGTQESRKANTKAPTDIDSPKNLVTDQVTENTATVSWDPVKADIDRYVVRYTSADGETKEFLLGKDQSSTVLTGLRPGVEYKVDVWAQKGARESRKANTKAPTDIDSPKNLVTNQVTENTATVSWDPVQADIDRYVVRYTSADGETREIPVRKGKTSTVLTGLRPGVDYTIHVWAQKGTRESKKANTKAPTEIDSPKNLVTNRVTETTATISWDPVRAAIDRYMVRYTSADGETKEIPVSKEQSSTILTGLKPGVAYTVQVWAVKGARESKKVSTKALTEIDPPKNFRPFGVTHSGGALTWMPPSAQIDGYILTYQFPNGTVKEVRLGRGEQRFELQGLEQGITYPASLVAFKGDHRSRSVSTSLSTVDARFPHPSDCSQIQQNSDAASGLYTIYLNGDVNRPLKVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRSYVEGFGDPMQEFWLGLDKLHNLTSGTPTRYEVRVDLQTSNESAYAVYDLFQVASPKERYKLTVGKYRGTAGDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNGKYGETKHSEGVNWKPWKGHEFSIPYVELKIRPNGYSRERFHGRKKRTLGGKTRMF