Sequence details NCBI ID: XM_004852506.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ccdc88b
Gene Name coiled-coil domain containing 88B, transcript variant X2
Entrez Gene ID 101722675

Database interlinks

Part of NW_004624767.1 (Scaffold)

For more information consult the page for NW_004624767.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CCDC88B ENSCPOG00000026141 (Guinea pig)

Gene Details

coiled-coil domain containing 88B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018836, Guinea pig)

Protein Percentage 83.94%
CDS Percentage 87.21%
Ka/Ks Ratio 0.24663 (Ka = 0.0929, Ks = 0.3765)

CCDC88B ENSG00000168071 (Human)

Gene Details

coiled-coil domain containing 88B

External Links

Gene Match (Ensembl Protein ID: ENSP00000349238, Human)

Protein Percentage 78.55%
CDS Percentage 81.51%
Ka/Ks Ratio 0.18217 (Ka = 0.1362, Ks = 0.7478)

Ccdc88b ENSMUSG00000047810 (Mouse)

Gene Details

coiled-coil domain containing 88B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000109067, Mouse)

Protein Percentage 73.76%
CDS Percentage 78.13%
Ka/Ks Ratio 0.19593 (Ka = 0.173, Ks = 0.883)

Ccdc88b ENSRNOG00000024931 (Rat)

Gene Details

Protein Ccdc88b

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000033926, Rat)

Protein Percentage 73.93%
CDS Percentage 77.65%
Ka/Ks Ratio 0.19741 (Ka = 0.1772, Ks = 0.8978)

Genome Location

Sequence Coding sequence

Length: 4455 bp    Location: 21986115..21972905   Strand: -
Raw sequence   
>XM_004852506.1
ATGGAGGGGGGCCAGGGGCACACACTTGAAGACTTCCTGAGAGGGAGCCTGGCCACCTGGGCGCTGGGACTGGCTGAGCTAGTGGGGGAAGCGGAGGAGCCTTTGAGGACGGAGGAGGAGGAAGAGGAAGAGGGAGTTCTCAGTCTGGAGAAGAGGTTCCTGTGGCTCAGCGATGGGGCCCTGCTCCTCCGGGTGCTGGGTATCATTGCCCCCATTTCCCGATGGGCACACAGGATGGCCAGCAGCCACGATGGACCTGAGGCCTGTAGGGTGTGGAACCTGAGCCAGCTGTGGATCCGACTCAGGGAATTCTACCAGGAGGAGCTGCAGTTGCTGGTCTTGTTGCCACCCCCAGACCTCCAGATACTGGGGTTTGACCCCCTTTCAGGGGAGGCAATGGAGGGGCTGGGAGGCTTGCTTCGGCTGCTGCTGGGGGCATCGGTGCAGTGTGAGCACCGGGAACTCTTCATCCGCCATATCCAGGGGCTGAGCCTTGAAGTTCAGAGCGAGCTGGCTGCTGCCATCCAGGAGGTGACCCAGCCTGGGGCTGGTGTAGTGCTGACACTGGCTGGACCAGAGCCTGGGGAGCTGGCGCCTTTGGAGTTGGAGATGTTGTCCCGGAGCCTAATGGGGACACTATCCAGGCTGGCCAGGGAGAGGGACCTGGGGACTCAGAGACTGGCAGACCTGCTGCTGCAGCGAGAGCAGGTTCCCTTGCTGTCTGAGGCTCCTGGCAGGGCTCCCGCAGAGGGTCCTTCACACCACCTGGCGCTGCAGCTGGCCAATGCCAAGGCCCAGCTGCGGCGCCTGAGGCAGGAGCTGGAGGAGAAGGCCGAGTTGCTGCTGGACTCTCAGGCCGAGGTGCAGGGCCTGGAGGCCGAAATTCGAAGGCTTCGCCAAGAGGCTCAGGGGCTGTCCGGACAGGCCAAGCGGGCCGAGCTGTACCGCGAAGAGGTGGAGGCTCTGCGGCAGCGGACGGGACGCTTGTCCCGACTGCAGGAGGATCTGGGGCGCTGTCGCCAACGGCTTCAGGCTGCAGAGGCTTGCAAGAGCCAGCTAGAGGAGGAACGCGCGCTCTCAGGAGCCCTGGAGGCCTCGAAGGCGCTGCTGGAAGAGCAGCTGGAGGCTGCCCGAGAGCGCTGTGCTCGACTACATGAGACCCAGCGTGAGAACTTGCTGCTACGCACACGGTTGGGCGAGGCTCATGCGGAGCTGGACTCTCTTCGGCATCAGGTGAACCAGCTGGCAGAAGAGAACGTGGAGCTGGAGCTGGAGCTCTGCCGGAGTCTGGAGCCACCCCCAGACTCCCCTGCAGAGGCACCTCTGCCCAGAACAGCCCCCTCGCTGCAGGATGAGGTGAGGGAGGCAGAGGCAGGGCAGCTGCGAACCCTGGAGCGGGAGAATCAGGAGCTTCGAGCCCTGCTTCAGGTGTTGCAGAGGCAGCGAGGTGGCCAGCTCCCCCTGCTGGAGGAGCAGAGCAGGGAGTCAGTGCTTCTGGTACTGGATGGCACTTCCCGGACACCCTTGGCTTCTGACCTCAACCCCCAGGGCTTCTTTTGCCAGGTGGGGGATCAAGACCCCCAGCAGGCTCACCCTGCATCAGACTCAGGCCTGGAGGGATCAGCTGAGAATACCCAGGCATCTGACTCACACCGAGCAGTGACAGAGAGGCCTTTCCAGGCAGCTGCTCCAGCCTCCCAGACCTCACACTTGACTCCCCAAGAGTCACATGCTGGCGTGGAGGCACAGAGGTCCCTGGAGAAGCCTACCTCTGGAGCCCCTCTCCAGTCACCCATTTCTCTAGCCCCATATCAGGGTCCAGAGATCAAAATTGAGAAGCAGCAGTTGCTGGAAGGAGAGACTGGGGAGATGCAGCCTCCTCAAAAGGAGTTGATGCCTGAAGCCCAGGGTCTGAGAAAGGAACATCCTGAGCACAAGCAAGGCTCCTCAGAGCTCAGCCTCTGTGTGCTGCTGGAGAAGGAGACTGTGGGTCAGCCACTGGATGAGTCCACCAAATGGACAGAAGCCCAAGGGCATGAATGGAGGCTGGAGAGAATGGTTGGAGGACCAGCCCCTCCCTTACCAGAGCAGACCTCTAAAGATGCTCCTGATGCCAGGGCCTGGGAAGGGCCGATCTCAGAGGAAGCCCTGGGTAGTGGTGTCTCAGAGCAGGATGCCCTCAGGGAGGAGTTAGCACTGCTAAGGACAGAGGCTGTGGCTCTGGAGGCTGAGCTGGAGGCCCAGGCCCGAAGGCTGGAGGCCCGAGGTGCAGAGGTGGCCCGGCTCTCTGAGGAGCTGTCCCACGCATGTAGGGCAGAGGCTGAGGCCCATCGGGAGGTGGAGGCCCAGGTCCAGGAGCAGGCCCGGCTGCAGGAAGCTGTGGAGGCAGCTGGCCGGGAGCTGGAGGCTTTGTCACGGGAGCGAGAGGCACTGGCAGAGGCGCTGGCAGCAGCAGGTCGAGAGCGGAGGCAGTGGGAACGCGAGGGGCCCAGGCTGCGGGCTCGGGCCGAGGCTGCTGAGGAACGGGTACAGGCACTGGAGAGCCAGGGCCAAGACCGCCTGGAGGAGGCTGAGCGGGAGCGCCAGGAGAAGCAGGCCCTCAGCGAGGAGCTAGAGAAGGCCATGCTACGGGGCCAGGAGCTGGGGTCCCGCCTGGAGCACCTGCAGCAGGACCTGGAGCAGGCGGCCCAAGAGCGCCAGAAGTTTCTTCGGGAACAAGAGAACCAGCAGCAGAGGTACCAGGGCCTGGAGCAGCGGCTAGAGGCTGAGCTGCAGGCTGCAGCCACCAGCAAGGAGGAAGCGCTGATGGAGCTCAAGAGCAGGGCACTGAAGCTGGAAGAGGAGCTGCTCCAGCTGCGCCAGGGCCCTGTGGGGCTTGCTTCCGAGGGGCACTCTGAGTCACAGATTGCAGCGGCCCAGGGCAGCCGGCTCATTGAGGTGGAGCGCAGTAATGCAACGTTGGTGGCTGAGAAGGCGGCTCTGCAGGGACAGCTGCAGCACCTGGAGGGGAAGCTGGGGAGCCTACAGGACCGGGCCCAGGAGCTGCTGCTGCAGAGTCAGCGGGCACAGGAGCACAGTAGCCACCTACAGGCTGAGAAGTCTGTGCTGGAGCTGCAAGGCCAGGAGCTGCACCAGAAGCTGGGGGTGCTGGAGGCAGAGGTTCGTGCAGCACGGCAGGCCCACGAGGAGGCGAGAGGGCAGCAACAGGCCCTGCTGCGGGACCACCAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGGCCGAGCTGGAGCGACTGCTGGGCCGGCACCGTGACCTCAAGGCCAAGATGCGGACGCTGGAGCTGGCCCACCGGGAGCTGCAGGGCCGGCATGACCAGCTGCAGGCCCAAAGGGCAAATGTGGAGGCACAGGAGGTGGCTCTGTTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACACCGGCAGTGGGGCATGGAGGAAGAGCTTCGGAGGCTGCAGAGTGAACACGACAGAGCTCAAGTGCTGCTGGCGGAGGTATCTCGGGAGCGCGGGGAGCTGCAGGGTGAACGTGGGGAGCTGAAAGGGCGGCTGGCGAGGCTGGAGCTGGAGAGGGCACAGCTCGAGGTACAGAGCCAGCAGCTGCGCGAGTCTAACCAGCAGCTGGACCTGAGCGCCTGCCGGCTGGCCACACAATGCGAGCTGCTGACAGAGCTGCGGAGTGCCCAGGAGGAGGAGAACCGGCAGCTGCTGGCTAAGGTGCAGGCCCTGAGCCGGGAGAACAGGGAGCTGTTGGAGCGCAGTCTGGAGAGCCGGGACCACCTGCATCGGGAGCAGCGCGAGTACCTAGACCAGCTTAATGCTCTTCGCCGTGAGAAGCAGAAGCTAGTAGAGAAGATCATGGACCAGTACCGAGTGCTGGAGCCTGGGCCCCTGCCCCGGACCAAGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTGATGCGGCCCCGGCGGGAGGGGGGCCCCCACGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACCGAGAGCCTGGGGGGCCCCCCAGAGATGGGGGGCCCCCCAGAGACGGAGCTCCCCGAGGGCAGGGAGGCAGATGGGACAGGGGTCCCTTCACCAGCACCCATGCGCCGGGCCCAGAGCTCCCTCTGCCTTCGAGAGACCCTGGCTGGCAGTGGGCAGCGACGGAAACTCAGTTCCCGGCTTCCCACGGGGCGAAGCTCAGAGTCATTTAGCCCAGGGGATACCCCCCGGCAGAGATTCCGCCAGCGCCGTCCAGGCCCCCTGGGAGCACCTAGCACCCACAGCAAAGGGTCTGCTTTGTGCCCATCAGGTGTGGAATGGGACGGCTCCGCTGAGACCCTCCAGGAACATGAAGCAGATGCCAACAGAGAGAGCCTCAAGGAGCAGGAACCGGAGAAACATCCCCTCGCCACATCCCTCAGCCAGTGA

Related Sequences

XP_004852563.1 Protein

Ccdc88b PREDICTED: coiled-coil domain-containing protein 88B isoform X2 [Heterocephalus glaber]

Length: 1484 aa      View alignments
>XP_004852563.1
MEGGQGHTLEDFLRGSLATWALGLAELVGEAEEPLRTEEEEEEEGVLSLEKRFLWLSDGALLLRVLGIIAPISRWAHRMASSHDGPEACRVWNLSQLWIRLREFYQEELQLLVLLPPPDLQILGFDPLSGEAMEGLGGLLRLLLGASVQCEHRELFIRHIQGLSLEVQSELAAAIQEVTQPGAGVVLTLAGPEPGELAPLELEMLSRSLMGTLSRLARERDLGTQRLADLLLQREQVPLLSEAPGRAPAEGPSHHLALQLANAKAQLRRLRQELEEKAELLLDSQAEVQGLEAEIRRLRQEAQGLSGQAKRAELYREEVEALRQRTGRLSRLQEDLGRCRQRLQAAEACKSQLEEERALSGALEASKALLEEQLEAARERCARLHETQRENLLLRTRLGEAHAELDSLRHQVNQLAEENVELELELCRSLEPPPDSPAEAPLPRTAPSLQDEVREAEAGQLRTLERENQELRALLQVLQRQRGGQLPLLEEQSRESVLLVLDGTSRTPLASDLNPQGFFCQVGDQDPQQAHPASDSGLEGSAENTQASDSHRAVTERPFQAAAPASQTSHLTPQESHAGVEAQRSLEKPTSGAPLQSPISLAPYQGPEIKIEKQQLLEGETGEMQPPQKELMPEAQGLRKEHPEHKQGSSELSLCVLLEKETVGQPLDESTKWTEAQGHEWRLERMVGGPAPPLPEQTSKDAPDARAWEGPISEEALGSGVSEQDALREELALLRTEAVALEAELEAQARRLEARGAEVARLSEELSHACRAEAEAHREVEAQVQEQARLQEAVEAAGRELEALSREREALAEALAAAGRERRQWEREGPRLRARAEAAEERVQALESQGQDRLEEAERERQEKQALSEELEKAMLRGQELGSRLEHLQQDLEQAAQERQKFLREQENQQQRYQGLEQRLEAELQAAATSKEEALMELKSRALKLEEELLQLRQGPVGLASEGHSESQIAAAQGSRLIEVERSNATLVAEKAALQGQLQHLEGKLGSLQDRAQELLLQSQRAQEHSSHLQAEKSVLELQGQELHQKLGVLEAEVRAARQAHEEARGQQQALLRDHQALVQLQRRQEAELERLLGRHRDLKAKMRTLELAHRELQGRHDQLQAQRANVEAQEVALLAERERLMQDGHRQWGMEEELRRLQSEHDRAQVLLAEVSRERGELQGERGELKGRLARLELERAQLEVQSQQLRESNQQLDLSACRLATQCELLTELRSAQEEENRQLLAKVQALSRENRELLERSLESRDHLHREQREYLDQLNALRREKQKLVEKIMDQYRVLEPGPLPRTKKGSWLADKVKRLMRPRREGGPHGGPRLGADGAGSTESLGGPPEMGGPPETELPEGREADGTGVPSPAPMRRAQSSLCLRETLAGSGQRRKLSSRLPTGRSSESFSPGDTPRQRFRQRRPGPLGAPSTHSKGSALCPSGVEWDGSAETLQEHEADANRESLKEQEPEKHPLATSLSQ