Sequence details NCBI ID: XM_004852160.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ppfia1
Gene Name protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1, transcript variant X11
Entrez Gene ID 101707111

Database interlinks

Part of NW_004624767.1 (Scaffold)

For more information consult the page for NW_004624767.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PPFIA1 ENSCPOG00000005552 (Guinea pig)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004999, Guinea pig)

Protein Percentage 96.84%
CDS Percentage 93.73%
Ka/Ks Ratio 0.06984 (Ka = 0.0153, Ks = 0.2191)

PPFIA1 ENSG00000131626 (Human)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000253925, Human)

Protein Percentage 97.25%
CDS Percentage 90.68%
Ka/Ks Ratio 0.03406 (Ka = 0.0137, Ks = 0.4008)

Ppfia1 ENSMUSG00000037519 (Mouse)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000138312, Mouse)

Protein Percentage 96.5%
CDS Percentage 87.79%
Ka/Ks Ratio 0.03012 (Ka = 0.0178, Ks = 0.591)

Ppfia1 ENSRNOG00000020857 (Rat)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000032648, Rat)

Protein Percentage 96.22%
CDS Percentage 86.95%
Ka/Ks Ratio 0.03159 (Ka = 0.021, Ks = 0.6644)

Genome Location

Sequence Coding sequence

Length: 3609 bp    Location: 17024336..16907663   Strand: -
Raw sequence   
>XM_004852160.1
ATGATGTGCGAGGTGATGCCCACTATCAGTGAAGCAGAAGGCCCCCCGGGAGGAAGTGGAAGCCATGGATCTGGCTCCCCTTCACAGCCAGACGCAGATTCTCATTTTGAACAGCTTATGGTCTCCATGCTAGAAGAAAGGGATCGTCTTCTCGACACACTGAGAGAGACTCAAGAAACATTGGCATTAACCCAGGGGAAATTACACGAGGTTGGTCATGAAAGAGACTCCTTGCAGAGACAGCTCAATACCGCACTTCCACAGGAGTTTGCAGCACTCACGAAAGAACTCAACGTATGCAGGGAACAGCTGCTTGAGAGGGAAGAAGAAATTGCCGAGCTGAAAGCAGAAAGGAACAACACGAGGCTGCTCCTGGAACATTTGGAGTGCCTTGTCTCCAGGCACGAGCGCTCCCTCAGGATGACTGTGGTGAAGCGACAAGCGCAGTCTCCTGCAGGCGTGTCCAGTGAGGTGGAGGTGCTTAAAGCACTGAAGTCCTTATTTGAGCACCACAAGGCCCTGGATGAAAAGGTGCGAGAGCGATTACGAGTAGCACTGGAAAGGTGCAGTTTGTTAGAAGAAGAATTAGGTGCCACACACAAGGAGCTAATGATTCTTAAAGAACAGAATAATCAGAAAAAAACACTAACAGATGGAACTCTTGACGTAAACCATGAACAAGAAAATACACCAAGCACTAATGGAAAGAGATCTTCTGATGGCTCTTTAAGCCACGAGGAAGACCTTGCTAAAGTAATTGAGCTCCAAGAAGTCATAGACAAGCAGTCAAGAGAGCAGAGCCAGATGAAGGAGCGCCTGGCTGCCCTCTCCAGCCACGTGTCGGAGTTGGAAGAGGATCTTGACACAGCTAGAAAGGATCTCATCAAGTCTGAAGAAATGAACACAAAATTGCAAAGAGAAGTTCGCGAAGCAATGGCCCAGAAGGAAGACATGGAGGAGAGAATCACTACCCTTGAAAAACGCTACCTCGCTGCACAGCGTGAAGCCACATCTGTGCATGACCTCAATGATAAACTTGAAAATGAAATTGCAAATAAAGATTCTATACATCGGCAGACAGAGGATAAAAACCGCCAGTTACAGGAGCGCCTGGAGCTGGCTGAGCAGAAGCTGCAGCAGACCCTGAGGAAGGCAGAGTCGCTGCCAGAGGTGGAGGCAGAACTGGCCCAGAGAGTGGCAGCACTCTCCAAGGCTGAAGAAAGACATGGCAACATTGAAGAGAGGCTACGGCAGATGGAGGCGCAGCTGGAAGAGAAAAACCAAGAACTGCAGCGGGCAAGGCAAAGAGAAAAGATGAATGAAGAACATAATAAACGCTTATCAGACACTGTTGACAAGCTGCTTTCAGAGTCCAACGAGAGGCTTCAGCTCCATCTGAAGGAGAGAATGGCCGCGCTGGAAGATAAGAATTCTCTATTACGAGAAGTTGAAAATGCAAAAAAGCAATTAGAAGAAACACAACATGATAAGGAGCAGCTTGTCCTGAACATCGAAGCTCTGAGGGCAGAGCTGGACCAGATGAGGCTGAGAGGGGCTTCACTCCACCTTGGCCGTCCCCACTTGGGCAGTGTCCCAGATTTCAGGCTCCCCATGGCAGACGGGCACACAGATGCCTACAGCACCAGTGCAGTGTTGCGGCGCCCCCAGAAAGGCCGGCTGGCAGCGCTGCGGGACGAGCCTTCCAAGGTACAGACTCTCAATGAACAGGATTGGGAACGTGCCCAGCAAGCCAGTGTTTTGGCAAATGTTGCACAGGCATTTGAGAGCGATGTTGATGTGTCTGATGGTGAAGATGACAGGGACACTCTGCTCAGCTCAGTTGATCTGTTGTCACCCAGCGGGCAGGCCGATGCACAGACTCTGGCCATGATGCTTCAGGAACAGCTGGATGCCATCAACAAAGAGATCAGGCTGATACAAGAAGAAAAGGAAAACACAGAGCAGCGGGCAGAGGAGATTGAGAGTAGAGTTGGCAGTGGAAGTTTAGACAATCTTGGTCGTTTTAGATCAATGAGCTCTATTCCCCCCTTTCCTGCTTCCTCGCTTGCTGGCTCCTCTCCTCCAGGCAGCGGTCGCTCCACCCCTAGAAGGGTCCCTCACAGCCCGGCCCGGGAGGTGGACCGGCTGGGCGTCATGACTCTGTCACCAGCTTCCAGAGAAGAGGTACGAGATGATAAGACAACGATAAAATGTGAAACTTCCCCTCCCTCCTCTCCAAGGTCCCTTCGATTAGACAGGCTGCACAAAGGGGCATTGCATACTGTCAGCCACGAGGACATCAGGGACATGAGAAACTCAACAGGCTCCCAGGATGGTCCTGTGAGCAATCCCAGCAGCAGTAACAGCAGCCAGGACTCGCTCCACAAAGCCCCCAAGAAGAAGGGCATCAAGTCCTCTATTGGCCGTTTGTTTGGCAAGAAGGAAAAGGGCCGGCCTGGACAAACTGGCAAAGAATCTCCAGGACAAGCTGGTGTTTCAGAGACAGAAAACTCATCTCAAGATGCCCTGGGACTTAGCAAATTGGGAGGACAGGCTGAAAAAAATCGTAAACTTCAAAAAAAACACGAATTGCTGGAGGAAGCCCGGAGGCAAGGCTTACCGTTTGCACAGTGGGATGGGCCAACAGTGGTTGTATGGCTGGAGCTCTGGGTTGGGATGCCTGCTTGGTACGTGGCTGCCTGCAGAGCAAATGTGAAAAGTGGGGCCATCATGTCAGCCCTGTCAGACACAGAGATCCAACGGGAGATTGGCATCAGCAACCCCCTACACAGGCTGAAGTTGCGGCTGGCCATCCAGGAGATCATGTCACTAACCAGCCCATCTGCCCCGCCCACATCGAGAACGACACTTGCATATGGGGACATGAACCATGAGTGGATTGGCAATGAGTGGCTGCCCAGCCTGGGTCTCCCTCAGTACCGCAGCTACTTCATGGAGTGCCTTGTGGATGCCCGGATGCTGGACCACCTGACCAAGAAAGACCTGCGAGGGCAGCTGAAAATGGTCGACAGTTTTCACAGAAACAGTTTCCAGTGTGGAATTATGTGCCTGCGAAGATTAAATTATGATCGAAAAGAACTGGAAAGAAAAAGAGAAGAAAGTCAGAATGAAATAAAAGATGTGCTTGTTTGGAGCAATGATCGAGTGATTCGCTGGATCTTATCCATTGGCCTTAAAGAATATGCAAACAATCTTATAGAGAGTGGTGTTCACGGTGCACTTCTGGCCTTAGATGAAACCTTCGATTTCAATGCACTGGCACTGTTGTTACAGATCCCAACACAGAATACACAGGCTCGAGCTGTCTTGGAAAGAGAGTTTAACAACCTTTTGGTCATGGGGACTGACAGAAGGTTTGATGAAGACGATGACAAAAGCTTTAGGAGAGCACCTTCATGGAGAAAGAAGTTTAGACCAAAGGACATTCGTGGCTTGGCAGCTGGGTCAGCAGAGACACTCCCTGCAAACTTTCGAGTCACTTCTTCCATGTCTTCCCCCTCTATGCAGCCAAAGAAGATGCAGATGGACGGCAGTGTATCAGGAACACAGAGGTTGGATTCTGCTACAGTCAGGACTTACTCCTGCTAA

Related Sequences

XP_004852217.1 Protein

Ppfia1 PREDICTED: liprin-alpha-1 isoform X11 [Heterocephalus glaber]

Length: 1202 aa      View alignments
>XP_004852217.1
MMCEVMPTISEAEGPPGGSGSHGSGSPSQPDADSHFEQLMVSMLEERDRLLDTLRETQETLALTQGKLHEVGHERDSLQRQLNTALPQEFAALTKELNVCREQLLEREEEIAELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEKVRERLRVALERCSLLEEELGATHKELMILKEQNNQKKTLTDGTLDVNHEQENTPSTNGKRSSDGSLSHEEDLAKVIELQEVIDKQSREQSQMKERLAALSSHVSELEEDLDTARKDLIKSEEMNTKLQREVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLNDKLENEIANKDSIHRQTEDKNRQLQERLELAEQKLQQTLRKAESLPEVEAELAQRVAALSKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSDTVDKLLSESNERLQLHLKERMAALEDKNSLLREVENAKKQLEETQHDKEQLVLNIEALRAELDQMRLRGASLHLGRPHLGSVPDFRLPMADGHTDAYSTSAVLRRPQKGRLAALRDEPSKVQTLNEQDWERAQQASVLANVAQAFESDVDVSDGEDDRDTLLSSVDLLSPSGQADAQTLAMMLQEQLDAINKEIRLIQEEKENTEQRAEEIESRVGSGSLDNLGRFRSMSSIPPFPASSLAGSSPPGSGRSTPRRVPHSPAREVDRLGVMTLSPASREEVRDDKTTIKCETSPPSSPRSLRLDRLHKGALHTVSHEDIRDMRNSTGSQDGPVSNPSSSNSSQDSLHKAPKKKGIKSSIGRLFGKKEKGRPGQTGKESPGQAGVSETENSSQDALGLSKLGGQAEKNRKLQKKHELLEEARRQGLPFAQWDGPTVVVWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEIMSLTSPSAPPTSRTTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRGQLKMVDSFHRNSFQCGIMCLRRLNYDRKELERKREESQNEIKDVLVWSNDRVIRWILSIGLKEYANNLIESGVHGALLALDETFDFNALALLLQIPTQNTQARAVLEREFNNLLVMGTDRRFDEDDDKSFRRAPSWRKKFRPKDIRGLAAGSAETLPANFRVTSSMSSPSMQPKKMQMDGSVSGTQRLDSATVRTYSC