Sequence details NCBI ID: XM_004851702.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdhr5
Gene Name cadherin-related family member 5, transcript variant X1
Entrez Gene ID 101709968

Database interlinks

Part of NW_004624766.1 (Scaffold)

For more information consult the page for NW_004624766.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDHR5 ENSCPOG00000022398 (Guinea pig)

Gene Details

cadherin-related family member 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017597, Guinea pig)

Protein Percentage 69.49%
CDS Percentage 78.01%
Ka/Ks Ratio 0.42141 (Ka = 0.2169, Ks = 0.5147)

CDHR5 ENSG00000099834 (Human)

Gene Details

cadherin-related family member 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000351118, Human)

Protein Percentage 64.74%
CDS Percentage 73.09%
Ka/Ks Ratio 0.28791 (Ka = 0.2548, Ks = 0.8849)

Cdhr5 ENSMUSG00000025497 (Mouse)

Gene Details

cadherin-related family member 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000127292, Mouse)

Protein Percentage 61.07%
CDS Percentage 70.4%
Ka/Ks Ratio 0.36979 (Ka = 0.3063, Ks = 0.8283)

CDHR5 ENSRNOG00000017762 (Rat)

Gene Details

Cadherin-related family member 5; Mucin and cadherin like, isoform CRA_c

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000044906, Rat)

Protein Percentage 61.07%
CDS Percentage 69.92%
Ka/Ks Ratio 0.25836 (Ka = 0.2921, Ks = 1.1307)

Genome Location

Sequence Coding sequence

Length: 2505 bp    Location: 21843506..21849832   Strand: +
Raw sequence   
>XM_004851702.1
ATGACACCCACATCCCCCCCTGGTGGTGGCCTGGCCTGGCCGCCCTGCGGGAGCCCCCTGGGTGGAGCTGTCAGCAGGGCCATAAAGCAGGGCGGCGCCTGGCAGGGCAAAGGTCGGTCGCGGAGACGGGGAAGGCCTAGCCCTGGACCGCAGACTGCCAGACCCTTCCGGCAGGTGACAGCCACTAAGATGGGGGCCAGGGCCCCACTGTGGGCCTCCCTGCTTCTGCTCCTCGCACTGCCAGGCCAACCCCCGGGGGCAGCAGCCCAGGGCCAGGTCTGCTCGGTGGACAGGACCTTTGTCAGCGTCGAGGAGAACAGCAGTGTTGCTGAGCCCCTGGTGAATATCTCCATCCCGGACGGCCAGCATGTCACCCTGGGGCCTTCGTCCAGCCCCTCCGCCTTCCGGATCCTGGTAGACCAGCTGTTCCTCAACGTGACCCCTGATTACGAGGACAGCACAATGCTGGAGGCTCACCTGGAATGCAGGAGGGGCAGCTCTGTGGTGACGCAGCTGGTGGTGCTGGTGTCCGTGCTGGATGTCAACGACAATGCCCCAGAATTCCCCTTTGAGACCAAGGAGCAGAACGTGTCGGAGGACACCAGAGTGGGCTCCATAGTCATCCCTGAGGACCAACTGAAGGCCTCCGACAAGGACTCGGAGGACGTCTTGTTCTACACCCTCCAGGAAGTGACCCCGAATGCCAGAAGCTTCTTCTCCCTGGTGAGCGCGAACCGCCCTGCCCTGCGGCTGGACCAGGCCCTGGACTTCTACAAGTGGCAGGACATGACTTTGCAGCTGCTGGTCCGGGACACTCAGGAGGAGACGGAGGTGCCCAGCCACAGGGCCACGGCCACCCTGGTCCTGCATGTGCTGCCCGCTGACCTGAGGCCCCCCTGGTTCCTGCCCTGCTCCTACTCAGACGGCTACGTCTGCATCCAGGCCCAGTACCATGGGGCTGTCCCCAAGGGACACACACTGCCATCCCCTCTCATCCTGCATCCCGGGCCCATCTATGCCGTGGATGGGGACCAGGGCATTGACGCGCGCATCATCTACAGCATTGTGGGGGGGAATACAGACAACACTTTTGCCGTTGACAAGGACTCTGGCAACCTCACCATGGCCAAGAGCATCCCCAGCCCCACGACCTTCATCTTGCTGATCAGGGCAGACCAGGCTGACCTGGCCCGATACTCGGTGACCCAGGCCACTGTGGAGGCCCGCTCTGCCACCGGGAACCCACCCCGCTTTCCCCAGAGCCTGTACCGGGGCATCGTGCCGCCCGGCTCTGAGGCCGGTGTGACTGTCCGGGACGCAGCCTCCCCGACCCAGCCTCTGAGGATCCAGGCTCAGGACCCTGACTTCCTGGGCCTCAACTCGGCTGTCACTTACCGAATCACCAACTGCTCTGAGTTCCGGATGGACGGGGAGACCATGCTGACCACTCTGGCGCTGGAGCATGAGGGAGTCTTCTACGCAGAGGTGGAGGCCACAAACACAGCGACCAACGACACAGCCACTGCTGTTGCTGAGATTTGGGTTTCAGAGCAGAAGCCCCCCACCATAGGACCCCCAGAGATCCCCCCATCCCCAGAGGCTGGAAGAACAAACAAGCCCTCAACCAGCACTGCCATGGAAACCCCCAGGCCCCCCAGGACTCCCCAAGGACCCTCTTCGACCAGTCCTGGGGGGGCCACTGGCCCTCACCCATCCTCAGGCACATCGCTGAGGCCGGCTGCCTCAACCACACCTGGGGGGCTCCCCGGTGTGGGAGCCAGCACCATCCTCTGGCCAGGCACGCCTGGTGGGGTCTCAGCTCCGACCCCGAAGCCAGGGACCTCTCGGCCAACGACCCCTGGGTCCAGCGGGAGCTCCTCAGCCTCAGGGACACCAGGAGTCGGCAGCACTGGTGAAGACGAGCCAGGCCGCCCAGAGGAGCTGCGCTTTTCCACGGTGGACATGGCGGTCCTGGGAGGGGTGCTGAGTGCACTGCTGCTGCTGGCCCTCACTGTCCTGGCTGTGCTCCTCTATAAGCACTATGGGCACCGACTGAGCTGCTGTTCTGGGAAAGCTGCGGAGCCCCAGCCCCACGTCTTTGACAACCAGGCCTTCCGGGGTGACCATGGGGCCACCGAGACATCTGTCCCCAGCCCCGAGCCGGGCCCCACGCCTGCGGAGATGCCACCTGCAGCCCTGGACCCTGAGCCCCTGAGCCCCGCACCCCCCAACCCTGAGCCCCTCGCCCCCGAGCCCCCAGTGGCCACTGGAGCCGGGGACAGCCCCTCGGCCGTGAGGTCCATCTTGACCAAGGAGCGGCGGCCTGGGGGTGGCTACAAGGCCGTGTGGTTTGGCGGGGACATCGGGGCAGCGGCTGACGTCGTGGTCCTCAGCGCGCCTGAGGCTGGCCGGGATGGCGAGGGCGACTCTGAGGGCAGCAGCGAGGAGGACGGGGGCCGGGACGGGGGTCCCCGCGACGCATCGGGCAGCTCCACCCGCATCTAG

Related Sequences

XP_004851759.1 Protein

Cdhr5 PREDICTED: cadherin-related family member 5 isoform X1 [Heterocephalus glaber]

Length: 834 aa      View alignments
>XP_004851759.1
MTPTSPPGGGLAWPPCGSPLGGAVSRAIKQGGAWQGKGRSRRRGRPSPGPQTARPFRQVTATKMGARAPLWASLLLLLALPGQPPGAAAQGQVCSVDRTFVSVEENSSVAEPLVNISIPDGQHVTLGPSSSPSAFRILVDQLFLNVTPDYEDSTMLEAHLECRRGSSVVTQLVVLVSVLDVNDNAPEFPFETKEQNVSEDTRVGSIVIPEDQLKASDKDSEDVLFYTLQEVTPNARSFFSLVSANRPALRLDQALDFYKWQDMTLQLLVRDTQEETEVPSHRATATLVLHVLPADLRPPWFLPCSYSDGYVCIQAQYHGAVPKGHTLPSPLILHPGPIYAVDGDQGIDARIIYSIVGGNTDNTFAVDKDSGNLTMAKSIPSPTTFILLIRADQADLARYSVTQATVEARSATGNPPRFPQSLYRGIVPPGSEAGVTVRDAASPTQPLRIQAQDPDFLGLNSAVTYRITNCSEFRMDGETMLTTLALEHEGVFYAEVEATNTATNDTATAVAEIWVSEQKPPTIGPPEIPPSPEAGRTNKPSTSTAMETPRPPRTPQGPSSTSPGGATGPHPSSGTSLRPAASTTPGGLPGVGASTILWPGTPGGVSAPTPKPGTSRPTTPGSSGSSSASGTPGVGSTGEDEPGRPEELRFSTVDMAVLGGVLSALLLLALTVLAVLLYKHYGHRLSCCSGKAAEPQPHVFDNQAFRGDHGATETSVPSPEPGPTPAEMPPAALDPEPLSPAPPNPEPLAPEPPVATGAGDSPSAVRSILTKERRPGGGYKAVWFGGDIGAAADVVVLSAPEAGRDGEGDSEGSSEEDGGRDGGPRDASGSSTRI