Sequence details NCBI ID: XM_004851581.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Bdnf
Gene Name brain-derived neurotrophic factor, transcript variant X1
Entrez Gene ID 101704465

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624766.1 (Scaffold)

For more information consult the page for NW_004624766.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

BDNF ENSCPOG00000009920 (Guinea pig)

Gene Details

Brain-derived neurotrophic factor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017078, Guinea pig)

Protein Percentage 96.84%
CDS Percentage 92.89%
Ka/Ks Ratio 0.03408 (Ka = 0.0135, Ks = 0.3953)

BDNF ENSG00000176697 (Human)

Gene Details

brain-derived neurotrophic factor

External Links

Gene Match (Ensembl Protein ID: ENSP00000414303, Human)

Protein Percentage 93.73%
CDS Percentage 87.45%
Ka/Ks Ratio 0.04549 (Ka = 0.0302, Ks = 0.6633)

Bdnf ENSMUSG00000048482 (Mouse)

Gene Details

brain derived neurotrophic factor

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000057989, Mouse)

Protein Percentage 93.0%
CDS Percentage 88.46%
Ka/Ks Ratio 0.05827 (Ka = 0.0333, Ks = 0.5707)

Bdnf ENSRNOG00000047466 (Rat)

Gene Details

brain-derived neurotrophic factor (Bdnf), transcript variant 1, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000064356, Rat)

Protein Percentage 93.17%
CDS Percentage 87.82%
Ka/Ks Ratio 0.05142 (Ka = 0.0325, Ks = 0.6312)

Genome Location

Sequence Coding sequence

Length: 786 bp    Location: 17330379..17281908   Strand: -
Raw sequence   
>XM_004851581.1
ATGTTCCACCAGGTGAGAAGAGGGATGACCATCCTTTTCCTTACTATGGTTATTTCGTACTTCGGTTGCATGAAGGCCGCCCCCATGAAAGAAGCCAGTGTCCGAGGCCCAGGCAGCTTGGCCTACCCCGGAGTGCGGACCCACGGGGCCCTGGACAGCGTGACCGGGCCCAAGGTGGGTGCGCGGGGCCTGGCGGCGTCTTCATCGTCTTCGTCGCTGGCTGACACTTTTGAGCACGTGATCGAGGAGCTGCTGGAGGAGGACCAGAAAGTCAGGCCCCATGAAGAGAATGCGAAGGACGCGGACTTGTACACGTCCCGGGTGATGCTGAGCAGCCAGGTGCCTTTGGAGCCGCCCCTCCTCTTTCTGCTCGAGGAATACAAAAATTACCTGGACGCTGCCAACATGTCCATGCGGGTCCGGCGCCACTCCGACCCGGCCCGCCGTGGGGAGCTGAGCGTGTGCGACAGCATCAGTGAGTGGGTCACCGCCGCGGATAAAAAGACTGCAGTGGACATGTCTGGCGGGACGGTCACCGTCCTGGAGAAGGTCCCCGTGTCCAAAGGCCAACTGAAGCAGTACTTCTACGAGACCAAGTGCAACCCCATGGGCTACACCAAGGAGGGCTGCAGAGGCATAGACAAGAGGCACTGGAACTCGCAGTGCCGAACTACCCAGTCCTACGTGCGGGCCCTCACCATGGATAGCAAAAAGAGAATTGGCTGGCGGTTCATAAGGATAGACACTTCCTGTGTATGTACACTGACCATTAAGAGAGGAAGATAG

Related Sequences

XP_004851638.1 Protein

Bdnf PREDICTED: brain-derived neurotrophic factor isoform X1 [Heterocephalus glaber]

Length: 261 aa      View alignments
>XP_004851638.1
MFHQVRRGMTILFLTMVISYFGCMKAAPMKEASVRGPGSLAYPGVRTHGALDSVTGPKVGARGLAASSSSSSLADTFEHVIEELLEEDQKVRPHEENAKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR