Details from NCBI annotation

Gene Symbol Calca
Gene Name calcitonin-related polypeptide alpha, transcript variant X1
Entrez Gene ID 101725159

Database interlinks

Part of NW_004624766.1 (Scaffold)

For more information consult the page for NW_004624766.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CALCA ENSCPOG00000015306 (Guinea pig)

Gene Details

calcitonin-related polypeptide alpha

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013793, Guinea pig)

Protein Percentage 84.29%
CDS Percentage 91.19%
Ka/Ks Ratio 0.51293 (Ka = 0.079, Ks = 0.154)

CALCA ENSG00000110680 (Human)

Gene Details

calcitonin-related polypeptide alpha

External Links

Gene Match (Ensembl Protein ID: ENSP00000331746, Human)

Protein Percentage 81.43%
CDS Percentage 87.38%
Ka/Ks Ratio 0.33711 (Ka = 0.1001, Ks = 0.297)

Calca ENSMUSG00000030669 (Mouse)

Gene Details

calcitonin/calcitonin-related polypeptide, alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000032907, Mouse)

Protein Percentage 76.87%
CDS Percentage 85.07%
Ka/Ks Ratio 0.35613 (Ka = 0.127, Ks = 0.3566)

Calca ENSRNOG00000011130 (Rat)

Gene Details

calcitonin-related polypeptide alpha (Calca), transcript variant 3, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014948, Rat)

Protein Percentage 79.1%
CDS Percentage 84.58%
Ka/Ks Ratio 0.30579 (Ka = 0.124, Ks = 0.4055)

Genome Location

Sequence Coding sequence

Length: 423 bp    Location: 6769230..6766185   Strand: -
>XM_004851472.1
ATGGGCTTCCAGAAGTTCTCCCCATTCCTGGCTCTCAGCATCTTAGTTCTGTACCTCTCAAGCAACCTGCATGCAGTGCCATTCAGGCAGGACTTGGAGAGCAGCCCAGTCCTGGTCGAGCTAGGTGAAGAGGAAGCGCGCCTCCTGCTGGCAGCACTGGTGCAGGACTACCTGCAGATGAAGGCCAGTGAGCTGGAGCAGGACCAGGAGACAGAGGGCTCCAGCCTGGACAGCCCCAGATCTAAGCGATGTGGTAATCTGAGTACCTGCATGCTGGGCACCTACACACAGGACCTCAACAAGTTTCACACATTCCCCCAAACTGCAATTGGGGTTGGAGCACCTGGCAAGAAAAGGGATATGGCCAGTGACTTGGAGACAAACCACCACCCTCTTGTTGGCATGCCCCAGGATGCCAACTAA

Related Sequences

XP_004851529.1 Protein

Calca PREDICTED: calcitonin gene-related peptide 2 isoform X1 [Heterocephalus glaber]

Length: 140 aa      View alignments
>XP_004851529.1
MGFQKFSPFLALSILVLYLSSNLHAVPFRQDLESSPVLVELGEEEARLLLAALVQDYLQMKASELEQDQETEGSSLDSPRSKRCGNLSTCMLGTYTQDLNKFHTFPQTAIGVGAPGKKRDMASDLETNHHPLVGMPQDAN