Details from NCBI annotation

Gene Symbol Copb1
Gene Name coatomer protein complex, subunit beta 1, transcript variant X3
Entrez Gene ID 101723246

Database interlinks

Part of NW_004624766.1 (Scaffold)

For more information consult the page for NW_004624766.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COPB1 ENSCPOG00000015221 (Guinea pig)

Gene Details

coatomer protein complex, subunit beta 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013721, Guinea pig)

Protein Percentage 99.69%
CDS Percentage 96.01%
Ka/Ks Ratio 0.00825 (Ka = 0.0014, Ks = 0.1736)

COPB1 ENSG00000129083 (Human)

Gene Details

coatomer protein complex, subunit beta 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000249923, Human)

Protein Percentage 99.16%
CDS Percentage 94.65%
Ka/Ks Ratio 0.01657 (Ka = 0.0038, Ks = 0.2323)

Copb1 ENSMUSG00000030754 (Mouse)

Gene Details

coatomer protein complex, subunit beta 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000033012, Mouse)

Protein Percentage 99.27%
CDS Percentage 91.78%
Ka/Ks Ratio 0.00978 (Ka = 0.0039, Ks = 0.3974)

Copb1 ENSRNOG00000012000 (Rat)

Gene Details

coatomer protein complex, subunit beta 1 (Copb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016292, Rat)

Protein Percentage 99.06%
CDS Percentage 91.82%
Ka/Ks Ratio 0.01261 (Ka = 0.0049, Ks = 0.3863)

Genome Location

Sequence Coding sequence

Length: 2862 bp    Location: 6376605..6334548   Strand: -
>XM_004851468.1
ATGACGGCAGCTGAGAACGTGTGCTATACGTTAATTAACGTGCCAATGGATTCAGAACCACCGTCTGAAATTAGCTTAAAAAATGACCTAGAAAAAGGAGATGTGAAATCAAAGACTGAAGCTTTGAAGAAAGTAATCATTATGATCCTGAATGGTGAAAAGCTTCCTGGACTTCTGATGACCATCATTCGTTTTGTGCTACCTCTTCAGGATCACACCATCAAAAAATTGCTTCTGGTATTTTGGGAAATTGTTCCTAAAACAACTCCAGATGGGAGACTTTTACATGAAATGATTCTTGTGTGTGATGCTTACAGAAAGGATCTTCAGCATCCTAATGAATTTATTCGAGGATCTACTCTTCGTTTTCTTTGCAAATTGAAAGAAGCAGAATTGCTAGAACCTTTAATGCCAGCTATCCGCGCTTGCTTGGAACATCGACACAGCTATGTTAGAAGAAATGCTGTTTTAGCCATCTATACTATCTATAGAAATTTCGAACATCTTATACCTGATGCTCCTGAGCTGATACATGATTTTCTGGTGAATGAGAAGGATGCAAGTTGCAAAAGGAATGCATTTATGATGCTAATCCATGCAGATCAGGATCGTGCTTTGGATTACCTGAGTACTTGTATTGATCAAGTTCAAACCTTTGGAGACATTCTGCAGTTGGTTATTGTTGAACTAATTTATAAAGTCTGTCATGCTAATCCTTCAGAAAGGGCTCGTTTCATTCGCTGCATCTATAACTTACTGCAGTCATCTAGCCCAGCTGTGAAATATGAAGCTGCTGGGACATTAGTAACACTTTCAAGTGCACCGACTGCAATCAAGGCTGCTGCTCAGTGTTACATTGATTTAATCATAAAGGAAAGTGACAATAATGTAAAGCTCATAGTTCTGGATCGATTGGTAGAATTAAAAGAACATCCTCCTCATGAACGAGTCCTCCAGGATCTGGTAATGGACATCCTAAGAGTATTGAGTACACCAGACTTAGAAGTACGCAAGAAAACTCTGCAGTTAGCACTGGATCTTGTCTCTTCTAGGAATGTTGAAGAGCTGGTTATTGTCTTGAAGAAGGAAGTGATTAAAACAAATAATGTGTCTGAGCATGAAGACACTGACAAATACAGACAACTCCTTGTACGAACATTACATTCCTGTTCTGTCCGGTTTCCAGATATGGCTGGAAATGTTATTCCTGTGTTAATGGAGTTTCTCAGTGACAGTAACGAAGCGGCAGCTGCTGATGTCTTGGAATTTGTTCGAGAAGCCATTCAGCGCTTTGATAACCTGAGAATGCTGATTGTTGAGAAGATGCTTGAAGTCTTTCATGCTATTAAATCTGTCAAGATCTATCGCGGAGCATTATGGATCCTGGGAGAATACTGTAGTACCAAGGAAGACATTCAGAGTGTGATGACTGAAGTCCGCAGGTCGCTGGGGGAGATCCCAATTGTGGAGTCAGAAATAAAGAAAGAAGCTGGTGATTTAAAACCTGAAGAGGAAATAACTGTGGGGCCGGTTCAGAAATTGGTTACTGAAATGGGTACCTATGCAACTCAGAGTGCCCTCAGCAGTTCTAGACCCACCAAGAAGGAGGAAGACAGACCTCCCCTGAGAGGATTTCTTCTGGATGGAGATTTTTTTGTTGCTGCTTCTCTTGCCACAACTCTGACCAAGATTGCATTGCGCTATGTAGCTTTGGTTCAGGAGAAGAAAAAGCAAAATTCTTTTGTTGCTGAGGCTATGTTGCTCATGGCAACTGTCCTTCATTTGGGAAAATCTTCTCTTCCTAAGAAGCCAATTACAGATGATGATGTAGACCGAATTTCCCTGTGCCTCAAGGTCTTGTCCGAATGTTCGCCTTTAATGAATGACATTTTCAATAAGGAATGCAGACAGTCTCTTTCTCAAATGTTATCTGCCAAACTTGAAGAAGAGAAACTATCCCAAAAGAAAGAATCTGAAAAGAGGAATGTGACAGTACAGCCTGATGACCCCATTTCCTTCATGCAACTAACTGCTAAGAATGAAATGAACTGCAAGGAAGATCAGTTTCAGCTGAGTTTGTTGGCAGCAATGGGTAACACTCAGAGGAAAGAGGCAGCAGATCCCCTAGCGTCTAAACTTAACAAGGTCACCCAGTTGACCGGTTTCTCAGATCCTGTGTATGCAGAAGCTTACGTTCATGTCAACCAATATGATATTGTCCTGGACGTACTTGTTGTGAACCAAACCAGTGATACTTTGCAGAACTGCACATTGGAGTTAGCTACTCTAGGGGATCTGAAACTTGTGGAAAAGCCATCTCCTTTGACTCTTGCTCCTCATGATTTTGCAAATATTAAAGCTAATGTCAAAGTAGCATCAACAGAAAATGGAATAATTTTTGGTAATATAGTTTATGATGTCTCTGGAGCAGCAAGTGACAGAAATTGTGTGGTCCTCAGTGATATCCACATTGACATTATGGACTATATCCAGCCTGCAACCTGCACTGATGCTGAATTCCGTCAGATGTGGGCTGAATTTGAATGGGAAAACAAAGTGACAGTTAACACCAATATGGTTGATTTAAATGACTATTTACAGCACATATTAAAGTCAACCAACATGAAGTGCCTCACTCCAGAGAAGGCCCTTTCTGGTTACTGTGGCTTCATGGCAGCCAACCTTTATGCTCGTTCTATATTTGGAGAAGATGCACTTGCAAATGTCAGCATTGAAAAGCCAATTCACCAAGGGCCAGATGCTGCTGTTACTGGCCATATAAGAATTCGTGCAAAGAGTCAGGGAATGGCCTTAAGTCTTGGAGATAAAATCAACTTGTCTCAGAAGAAAACTAGTATATAA

Related Sequences

XP_004851525.1 Protein

Copb1 PREDICTED: coatomer subunit beta isoform X3 [Heterocephalus glaber]

Length: 953 aa      View alignments
>XP_004851525.1
MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVELKEHPPHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAGNVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVESEIKKEAGDLKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATVLHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSI