Details from NCBI annotation

Gene Symbol Tub
Gene Name tubby homolog (mouse), transcript variant X7
Entrez Gene ID 101720190

Database interlinks

Part of NW_004624766.1 (Scaffold)

For more information consult the page for NW_004624766.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TUB ENSCPOG00000010358 (Guinea pig)

Gene Details

tubby bipartite transcription factor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009304, Guinea pig)

Protein Percentage 93.52%
CDS Percentage 92.24%
Ka/Ks Ratio 0.15466 (Ka = 0.0389, Ks = 0.2514)

TUB ENSG00000166402 (Human)

Gene Details

tubby bipartite transcription factor

External Links

Gene Match (Ensembl Protein ID: ENSP00000305426, Human)

Protein Percentage 93.85%
CDS Percentage 91.73%
Ka/Ks Ratio 0.11595 (Ka = 0.0358, Ks = 0.3084)

Tub ENSMUSG00000031028 (Mouse)

Gene Details

tubby candidate gene

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000033341, Mouse)

Protein Percentage 94.43%
CDS Percentage 90.32%
Ka/Ks Ratio 0.05604 (Ka = 0.0258, Ks = 0.4605)

Tub ENSRNOG00000046566 (Rat)

Gene Details

tubby homolog (mouse) (Tub), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000064486, Rat)

Protein Percentage 94.63%
CDS Percentage 89.73%
Ka/Ks Ratio 0.04884 (Ka = 0.0251, Ks = 0.5134)

Genome Location

Sequence Coding sequence

Length: 1515 bp    Location: 268838..293356   Strand: +
>XM_004851373.1
ATGACTTCCAAACCGCATTCCGACTGGATTCCCTACAGTGTCTTAGATGATGAGGGCAGCAACCTGAGGCAACAGAAGCTTGACCGGCAGCGGGCCCTGCTGGAGCAGAAGCAGAAGAAAAAACGCCAGGAGTCCCTGATGGTGCAGGCCAATCCCGAAGGGCGGCCCCGGAGCCGGCGGGCCCGGCAGTCAGAGGAGCAGGCCCCTCTGGTGGAGTCCTACCTCAGCAGCAGTGGCAGCACCAGCTACCAAGTTCAAGAGGCCGACTCACTCGCCAGTGTGCAGCTGGGAGCTGCCCGCCCAACAACACCAACCTCAGCCAAGAGAACCAAGGCAGCAGCTTCAGCAGGGGGCCAGGGTGGGGCCTCTAGGAAGGAGAAGAAGGGAAGGCACAAAGGCACCGGCGGGCCAGCAGCACCGGCAGAAGACAAGTCTGAGGCCCAAGGCCCAGTGCAGATCCTGACTGTGGGCCAGTCGGACCACGACACAGGAGAGACAGCAGCCAGTGGGGGCGCACGGCCCAGCGGGCAGGACCTCCGTGCCACGATGCAGAGGAAGGGAATCTCCAGCAGCATGAGCTTTGACGAGGAAGAGGAGGATGAGGATGAGAACAGCTCTAGCTCCTCCCAGCTAAACAGCAACACCCGCCCCAGCTCCGCCACTAGCAGGAAGTCCATCAGGGAGGCAGCCTCAGCGCCCAGCCCAACAGCCCCAGAGCCGAAGGTGGGTGTTGAGGTCCAGGACCTTGAGGAATTTGCACTCCGGCCGGCCCCCCAGGGCATTACCATCAAATGCCGAATCACCCGGGACAAGAAGGGGATGGACCGGGGCATGTACCCCACCTACTTCCTGCACCTGGACCGTGAGGACGGGAAGAAGGTGTTCCTCCTGGCCGGAAGGAAGAGAAAGAAGAGTAAAACGTCCAATTACCTCATCTCTGTGGACCCAACGGACCTGTCTCGAGGAGCAGACAGTTACATCGGGAAACTGCGGTCCAATCTGATGGGCACCAAGTTCACCGTTTATGACAATGGAGTCAACCCTCAGAAGGCGTCATCCTCTACTTTGGAAAGTGGGACCTTGCGCCAGGAGCTGGCAGCTGTGTGCTATGAGACAAACGTCTTAGGCTTCAAGGGGCCTCGGAAGATGAGTGTGATTGTCCCTGGCATGAACATGGTTCATGAGAGAGTCTCTATCCGTCCCCGAAACGAACATGAGACACTGCTAGCCCGATGGCAGAATAAGAACACAGAGAGTATCATCGAGCTGCAAAACAAGACCCCCGTCTGGAATGACGACACACAGTCCTACGTACTCAACTTCCACGGGCGCGTCACACAGGCCTCTGTGAAGAACTTCCAGATCATCCATGGCAATGACCCGGACTACATCGTCATGCAGTTTGGCCGGGTAGCGGAGGATGTGTTCACCATGGATTACAACTACCCGCTGTGTGCACTGCAGGCCTTTGCCATTGCACTGTCCAGCTTCGACAGCAAGCTGGCCTGCGAATAG

Related Sequences

XP_004851430.1 Protein

Tub PREDICTED: tubby protein homolog isoform X7 [Heterocephalus glaber]

Length: 504 aa      View alignments
>XP_004851430.1
MTSKPHSDWIPYSVLDDEGSNLRQQKLDRQRALLEQKQKKKRQESLMVQANPEGRPRSRRARQSEEQAPLVESYLSSSGSTSYQVQEADSLASVQLGAARPTTPTSAKRTKAAASAGGQGGASRKEKKGRHKGTGGPAAPAEDKSEAQGPVQILTVGQSDHDTGETAASGGARPSGQDLRATMQRKGISSSMSFDEEEEDEDENSSSSSQLNSNTRPSSATSRKSIREAASAPSPTAPEPKVGVEVQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGADSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE