Details from NCBI annotation

Gene Symbol Katnb1
Gene Name katanin p80 (WD repeat containing) subunit B 1, transcript variant X3
Entrez Gene ID 101720378

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

KATNB1 ENSCPOG00000006661 (Guinea pig)

Gene Details

katanin p80 (WD repeat containing) subunit B 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006000, Guinea pig)

Protein Percentage 96.79%
CDS Percentage 93.89%
Ka/Ks Ratio 0.0482 (Ka = 0.014, Ks = 0.2911)

KATNB1 ENSG00000140854 (Human)

Gene Details

katanin p80 (WD repeat containing) subunit B 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000368982, Human)

Protein Percentage 95.11%
CDS Percentage 90.18%
Ka/Ks Ratio 0.03731 (Ka = 0.0232, Ks = 0.6209)

Katnb1 ENSMUSG00000031787 (Mouse)

Gene Details

katanin p80 (WD40-containing) subunit B 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034239, Mouse)

Protein Percentage 94.96%
CDS Percentage 88.7%
Ka/Ks Ratio 0.03747 (Ka = 0.0244, Ks = 0.652)

Katnb1 ENSRNOG00000014626 (Rat)

Gene Details

katanin p80 (WD repeat containing) subunit B 1 (Katnb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000019770, Rat)

Protein Percentage 94.35%
CDS Percentage 88.4%
Ka/Ks Ratio 0.04422 (Ka = 0.0282, Ks = 0.6385)

Genome Location

Sequence Coding sequence

Length: 1968 bp    Location: 28380369..28360464   Strand: -
>XM_004843144.1
ATGGCCACCCCTGTGGTCACCAAGACAGCCTGGAAGTTGCAAGAGATTGTTGCCCATGCCAGCAATGTGTCCTCGCTGGTGTTGGGCAAAGCCTCAGGACGGCTGCTGGCCACGGGTGGGGATGACTGCCGAGTCAACTTGTGGTCCATCAACAAGCCCAACTGCATCATGAGCCTGACAGGTCACACGTCCCCAGTGGAGAGTGTCCGCCTCAACACCCCGGAGGAGCTCATTGTGGCCGGCTCCCAGTCGGGCTCCATCCGAGTCTGGGACCTGGAAGCTGCCAAAATTCTTCGCACACTCATGGGACACAAAGCCAACATCTGCAGCCTGGACTTCCACCCTTATGGCGAGTTTGTGGCCTCTGGTTCCCAGGACACAAACATCAAACTCTGGGACATCAGGAGGAAGGGCTGCGTCTTCCGGTATAGGGGGCACACCCAGGCTGTGCGGTGTCTCCGCTTCAGCCCTGATGGGAAGTGGTTGGCGTCAGCCGCAGATGACCACACAGTGAAGCTCTGGGACCTGACTGCTGGCAAGATGATGTCCGAGTTCCCTGGTCACACGGGGCCTGTGAACGTGGTAGAGTTTCACCCCAACGAGTACCTCCTTGCTTCTGGCAGCTCCGACAGGACGATCCGTTTTTGGGATCTGGAGAAGTTCCAGGTGGTGAGCTGCATTGAAGGAGAGCCAGGGCCTGTCAGGAGTGTCCTCTTCAACCCAGATGGCTGCTGCCTGTACAGTGGCTGCCAGGACTCACTCCGTGTCTATGGCTGGGAGCCCGAGCGCTGCTTTGATGTGGTCCTTGTCAACTGGGGCAAGGTGGCTGACCTGGCCATCTGCAATGACCAGCTGATAGGCGTGGCCTTCTCCCAAAGCAACGTCTCCTCCTACGTGGTGGACCTGACGCGAGTCACTAGGACAGGCACAGTGGCCCAGGACCCCGTGCAAGACAGCCGGCCCCTGACGGAGCAGTCACCCAACCCCAATGCCCCACTCCGGCGCATCTACGAGCGGCCCAGCACGACCTGCAGCAAGCCCCAGAGGGTGAAGCACAACTCAGAGAGCGAGCGCCGCAGCCCCAGCAGCGATGACGACAGGGACGAACGTGAGTCCCAGGCTGAGATCCAGAATGCTGAGGACTACAATGAGATCTTCCAGCCCAAGAACAGCATCAGTAGGACGCCACCCCGAAGAAGCGAGCCCTTCCCAGCACCCCCTGAAGACGACGCAGCCACAGTGAAGGAGGCAGCAAAGCCCAGCCCAGCTATGGACGTGCAGTGCGCAATGCCAAACCTCGAGGTCCCAGTCCAGCCCCCAGTGCTGACATCCACGCCTACACCCAAGGGTGAGCCTGCCATCATCCCTGCCACTCGGAATGAGCCCATTGGCCTGAAGGTCTCTGACTTCTTGCCTGCTGTGAAGATCCCCCAGCAGGCAGAGCTGCTGGATGAAGACGCCATGTCACAGATCCGCAAAGGCCACGACACCATGTGCGTGGTGCTCACCAGCCGCCACAAGAACCTGGACACCGTGCGGGCTGTGTGGACCACAAGTGACATCAAGACATCCGTAGACTCTGCTGTGGCCATCAACGACCTATCAGTGGTGGTGGATCTCCTGAACATAGTCAACCAGAAAGCCTCCCTGTGGAAGCTGGACCTGTGCACCACCGTCCTGCCACAGATCGAGAAGCTTCTGCAGAGCAAGTATGAGAGCTATGTCCAGACAGGCTGCACTTCCCTGAAGCTGATCCTGCAGCGCTTCCTGCCCCTGATCACAGACATCCTTGCTGCCCCGCCCTCCGTGGGTGTTGATATCAGCCGTGAGGAGAGGCTTCACAAGTGCCGGCTCTGCTACAAGCAGCTCAAGAGCATCACTGGCCTTGTCAGGAGCAAGTCCAGCCTGAGTGGCCGCCACGGTAGTGCCTTCCGGGAGCTGCACCTGCTCATGGCTGCTTTGGACTGA

Related Sequences

XP_004843201.1 Protein

Katnb1 PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X3 [Heterocephalus glaber]

Length: 655 aa      View alignments
>XP_004843201.1
MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVAQDPVQDSRPLTEQSPNPNAPLRRIYERPSTTCSKPQRVKHNSESERRSPSSDDDRDERESQAEIQNAEDYNEIFQPKNSISRTPPRRSEPFPAPPEDDAATVKEAAKPSPAMDVQCAMPNLEVPVQPPVLTSTPTPKGEPAIIPATRNEPIGLKVSDFLPAVKIPQQAELLDEDAMSQIRKGHDTMCVVLTSRHKNLDTVRAVWTTSDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCYKQLKSITGLVRSKSSLSGRHGSAFRELHLLMAALD