Details from NCBI annotation

Gene Symbol Usb1
Gene Name U6 snRNA biogenesis 1, transcript variant X2
Entrez Gene ID 101718640

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

USB1 ENSCPOG00000014325 (Guinea pig)

Gene Details

U6 snRNA biogenesis 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012903, Guinea pig)

Protein Percentage 89.43%
CDS Percentage 91.57%
Ka/Ks Ratio 0.27871 (Ka = 0.0555, Ks = 0.1992)

USB1 ENSG00000103005 (Human)

Gene Details

U6 snRNA biogenesis 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000219281, Human)

Protein Percentage 86.04%
CDS Percentage 87.67%
Ka/Ks Ratio 0.2028 (Ka = 0.0759, Ks = 0.3745)

Usb1 ENSMUSG00000031792 (Mouse)

Gene Details

U6 snRNA biogenesis 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034245, Mouse)

Protein Percentage 82.77%
CDS Percentage 83.27%
Ka/Ks Ratio 0.14882 (Ka = 0.0966, Ks = 0.6489)

Usb1 ENSRNOG00000013216 (Rat)

Gene Details

U6 snRNA biogenesis 1 (Usb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000017960, Rat)

Protein Percentage 83.9%
CDS Percentage 84.89%
Ka/Ks Ratio 0.16611 (Ka = 0.0889, Ks = 0.5354)

Genome Location

Sequence Coding sequence

Length: 804 bp    Location: 28166043..28152820   Strand: -
>XM_004843137.1
ATGAGCGCGGCGCCCCTGGTGGGCTACAGCAGCAGCGGCTCGGAGGATGAGGCCGAGGCCGCGGTCACCGAGCAGACCAGCCCGGGGTCTGGGGGCCACTGCCGTGGCCAGAGCCCCCTTCCCAATGAGAGGTTTCCAGTACCTGACAGTGTACTGAACATGTTCCCGGGCACAGAGGAAGGACCTGAGGATGACAGTGCAAAACATGGGGGACGAGTGCGTACCTTTCCCCACGAGCGTGGCAACTGGGTCACCCATGTCTATGTACCATATGAAGCCAGGGAGGAATTCCCAGATCTTCTTGACATGCTGCTGCCCCAGGCCCAGGCCTACGTGCCCCGGCTGGTGAAGATGGAGGCGTTCCACCTCAGCCTGTCTCAGAGCGTGGTTCTGCGCCACCATTGGATCCTCCCTTTTGTGCAGGCTCTGAAAGACCGAATGGCCTCCTTTGAAAGGTTCCTCTTTACTGCCAACCAGGTAAAGATTTATACCAATCAAGAGAAGACCAGGACCTTTGTTGGGCTTGAAGTCACCTCGGGGTATGCCCAGTTCTTGGACTTAGTTTCAGAAGTGGACAGAGTCATGGAGGAATTTGACCTCACCACTTTCTACCAGGACCCTTCATTCCACATCAGTCTGGCCTGGTGCGTGGGAGATGCATGTCTTCAGCTGGAAGGGCAGTGCCTGCAGGAATTACAGGAAATCGTGGATGAGTTTGAAGACTCTGAGATGCTGTTGCGTGTGCAGGCCATGCAGGTCCGCTGCAAGTCTGGGAACAAGTTCTTCTCCATGCCTTTGAAGTAA

Related Sequences

XP_004843194.1 Protein

Usb1 PREDICTED: U6 snRNA phosphodiesterase isoform X2 [Heterocephalus glaber]

Length: 267 aa      View alignments
>XP_004843194.1
MSAAPLVGYSSSGSEDEAEAAVTEQTSPGSGGHCRGQSPLPNERFPVPDSVLNMFPGTEEGPEDDSAKHGGRVRTFPHERGNWVTHVYVPYEAREEFPDLLDMLLPQAQAYVPRLVKMEAFHLSLSQSVVLRHHWILPFVQALKDRMASFERFLFTANQVKIYTNQEKTRTFVGLEVTSGYAQFLDLVSEVDRVMEEFDLTTFYQDPSFHISLAWCVGDACLQLEGQCLQELQEIVDEFEDSEMLLRVQAMQVRCKSGNKFFSMPLK