Sequence details NCBI ID: XM_004843089.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdh16
Gene Name cadherin 16, KSP-cadherin, transcript variant X9
Entrez Gene ID 101697697

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDH16 ENSCPOG00000021245 (Guinea pig)

Gene Details

cadherin 16, KSP-cadherin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017209, Guinea pig)

Protein Percentage 88.06%
CDS Percentage 90.71%
Ka/Ks Ratio 0.33695 (Ka = 0.066, Ks = 0.1959)

CDH16 ENSG00000166589 (Human)

Gene Details

cadherin 16, KSP-cadherin

External Links

Gene Match (Ensembl Protein ID: ENSP00000299752, Human)

Protein Percentage 80.63%
CDS Percentage 84.3%
Ka/Ks Ratio 0.27227 (Ka = 0.1141, Ks = 0.4192)

Cdh16 ENSMUSG00000031881 (Mouse)

Gene Details

cadherin 16

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000129663, Mouse)

Protein Percentage 78.07%
CDS Percentage 81.96%
Ka/Ks Ratio 0.33638 (Ka = 0.1469, Ks = 0.4368)

Cdh16 ENSRNOG00000012222 (Rat)

Gene Details

cadherin 16 (Cdh16), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016419, Rat)

Protein Percentage 78.45%
CDS Percentage 82.17%
Ka/Ks Ratio 0.32588 (Ka = 0.1429, Ks = 0.4386)

Genome Location

Sequence Coding sequence

Length: 2598 bp    Location: 19590771..19599885   Strand: +
Raw sequence   
>XM_004843089.1
ATGCTCCTAGTGCTGAGCTACATGTTGAGTGCTGGAAAATGCCATGATGGTGGCAGAGCTTCTTCCCTGGGGGGACTCCGTGTCTGGAGGTTGGCAGTGGGAAGCAGGACCATTCCCGAGCCACAAGTCCTCTCTTCCAGGAGGAATCCTCCTGTCAAGTCCTCCACGACCTTGGCCAGGCCCTGCCCTTCGGTCCTTGCCTGCAGTGTAAGGCCCACCCTGACCATGGTTCCTGCCTGGCTTTGGCTGCTTTGCTTCTCTATCCCCCAGGCTTTCCCTGAGGCCCAGCCTGCAGAACTGTCTGTGGAAGTCCCTGAGAACTATGGCGGAAATTTCCCTTTGTACTTGACCAAGCTGCCGCTGCCCCATGAGAAGCCTGAAGGGCAGATTGTGCTATCAGGGGACTCAGGCATACCAGCTGAAGGTCCCTTTGCTGTGGATTCAGACTCTGGCTTCCTGGTGGTGACCAGTGCCCTGGACAGGGAGGAACAGGCAGAATACAAGCTACAGGTCACCCTGGAGACTGGAGATGGATATGTCTTGTGGGGTCCACAGCCTGTGATTGTGCATGTGAAGGATGAGAACGATCAGGTGCCCCAGTTTTCCCAGACCATTTACAGAGCTCAGCTCAGCCAGGGCACCAGGCCTGGTATCCCCTTCCTCTTCCTTGAGGCTTCAGATGGGGATGCTCCAGGCACAGCCAACTCAGATCTTCAATTCCACGTCCTGAGCCAGACCCCAGCTCAGCCTTCATCAGACATGTTCCAGCTAGAGCCTCGGCGGGGAGCTCTGGCCCTCAGCCCCGAGGGGAGCACCAGCCTAGACCGTGCCCTGGAGGGGTCCTATCAACTATTGGTACAGGTCAAGGACATGGGTGACCAGGCCATAGGCCACCAGGCTACAGCCACCATAGAGGTCTCCATAGTACAGAGTACCTGGGTACCCCTAGAGCCCATCCACCTGGCAGAGAATCTCAAAGTCCCATACCCACACCCCATTGCCCAGGTACATTGGAGTGGGGGGAATGTGCACTATCACCTGGAGAGCCAACCCCCTGGACCATTTGATGTGGACGCAGATGGGAAACTCTATGTGACCATGGAGCTGGACCGAGAAGCCCAGGCTGAGTACCTGCTCCAGGCCTGGGCTCAGAATTCCCATGGTGAGGACTACGCAAAACCCCTGGAGTTTCATGTGGTGGTGACAGATGAGAACGACAATCCACCTGTCTGCCTCCCACGTGGTTCCTCAATCAGCATCCCTGAGCTCAGCGCCCCAGGCACTGAAGTGACTCAGCTGTTGGCAGAGGATGCAGATGCCCCTGGATCTCCCAATTCCCACATTGTGTATCAGCTTCTGACCCCTGAGCCCCAGAAGGGCGCTGAAGGGAGAGCCTTTGCCCTGGACCCCACCTCAGGCAGTGTGACTCTGGGCACTGTCCCCCTCCAAGCTGGCCAGGACATCCTCCTTCAGGTGCTGGCTATTGACCTAGCAGGAGCAGAGGAAGGGCTCAGCAGCATGTGTGAGGTCGAAATCACAATCACAGACATCAATGACCATGCCCCTGAGTTCACCATCTCCCAGATTGAGCCTGTAAGCCTCCCTGAGGATGTGGAGCCCGGTACTCTGGTGGCCACACTCATGGCCACTGATGCTGACCTTGAACCTGCCTTTCGCCTCATGGAGTTTGCCATTGAGGCAGGGGATAAGGAAGGGATTTTTGGCCTGGATTGGGAGCCAGGCTCTGACCATGTCCAACTCAAACTCCGCAAGAACCTCAGCTATGAGGCAATTCCCCACCACAAGGTGGTGGTGGTAGTGCGAAATGTGGAGAAACTGGTGGGCCCAGGCCCAGGCCCTGAAGCCACAGCCACAGTGACTGTGCTGGTGGAGAGGGTGATGCTGCCCCCTAAGTTGGACCAGGAAAACTATGAAGCCAGTGTCCCAATCAGTACACCAGCCGGCTCCCACCTGCTGACCATCCAGCCCTCAGATCCCATGAACAGAACCCTCAGGTTCTCCCTGGTCAATGACTCAGAGGGCTGGCTCTGCATCAAGGAGGTCTCTGGGGAAGTACACACAGCTCAGTCCCTGCAGGGCGCCCAACCTGGGGACACATACACGGTGCTTGTGGAAGCCCAGGATGCAGATGAGCCAAGACTGAGCGCCTCTGCTGCTCTAGTGGTCCACTTCCTGAAGCCCCCTCCTGCCCCAGCTCTGACTCTGGCACCCATGCCCACCCGATTCCTCTGCACACCCCGCCAGGACTACGGTGTGGTAGTCAGTGGACTCAGTGAGGATCCCAACCTGGCCAGTGTTCCCGGTCCCTACAGCTTTGCCCTTGGCCCAAACCCTACGGTGCAGCGGGATTGGCGCCTCCAGCCTCTCAATGATTCCCATGCCTACCTCATCCTGGCCCTGCATTGGGTAGAACCAGGTGAATATGAAGTTCCTGTGGTCGTCAGCCATAATGCCCACACATGGCAGCTCCTGGTCCAAGGCTTCTTCCTCATTCTCATCTTCACGCACTTGGCCCTGGCGAGGAAGAAGGACCTGAATCAGCCAGCAGACAGCATGCCCCTGAAGGTGGCCGTCTGA

Related Sequences

XP_004843146.1 Protein

Cdh16 PREDICTED: cadherin-16 isoform X9 [Heterocephalus glaber]

Length: 865 aa      View alignments
>XP_004843146.1
MLLVLSYMLSAGKCHDGGRASSLGGLRVWRLAVGSRTIPEPQVLSSRRNPPVKSSTTLARPCPSVLACSVRPTLTMVPAWLWLLCFSIPQAFPEAQPAELSVEVPENYGGNFPLYLTKLPLPHEKPEGQIVLSGDSGIPAEGPFAVDSDSGFLVVTSALDREEQAEYKLQVTLETGDGYVLWGPQPVIVHVKDENDQVPQFSQTIYRAQLSQGTRPGIPFLFLEASDGDAPGTANSDLQFHVLSQTPAQPSSDMFQLEPRRGALALSPEGSTSLDRALEGSYQLLVQVKDMGDQAIGHQATATIEVSIVQSTWVPLEPIHLAENLKVPYPHPIAQVHWSGGNVHYHLESQPPGPFDVDADGKLYVTMELDREAQAEYLLQAWAQNSHGEDYAKPLEFHVVVTDENDNPPVCLPRGSSISIPELSAPGTEVTQLLAEDADAPGSPNSHIVYQLLTPEPQKGAEGRAFALDPTSGSVTLGTVPLQAGQDILLQVLAIDLAGAEEGLSSMCEVEITITDINDHAPEFTISQIEPVSLPEDVEPGTLVATLMATDADLEPAFRLMEFAIEAGDKEGIFGLDWEPGSDHVQLKLRKNLSYEAIPHHKVVVVVRNVEKLVGPGPGPEATATVTVLVERVMLPPKLDQENYEASVPISTPAGSHLLTIQPSDPMNRTLRFSLVNDSEGWLCIKEVSGEVHTAQSLQGAQPGDTYTVLVEAQDADEPRLSASAALVVHFLKPPPAPALTLAPMPTRFLCTPRQDYGVVVSGLSEDPNLASVPGPYSFALGPNPTVQRDWRLQPLNDSHAYLILALHWVEPGEYEVPVVVSHNAHTWQLLVQGFFLILIFTHLALARKKDLNQPADSMPLKVAV