Sequence details NCBI ID: XM_004843053.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101718528

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRC29 ENSCPOG00000025275 (Guinea pig)

Gene Details

leucine rich repeat containing 29

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020777, Guinea pig)

Protein Percentage 85.44%
CDS Percentage 89.03%
Ka/Ks Ratio 0.36585 (Ka = 0.0877, Ks = 0.2396)

LRRC29 ENSG00000125122 (Human)

Gene Details

leucine rich repeat containing 29

External Links

Gene Match (Ensembl Protein ID: ENSP00000387318, Human)

Protein Percentage 73.11%
CDS Percentage 80.82%
Ka/Ks Ratio 0.38141 (Ka = 0.1756, Ks = 0.4605)

Lrrc29 ENSMUSG00000041679 (Mouse)

Gene Details

leucine rich repeat containing 29

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000063248, Mouse)

Protein Percentage 80.65%
CDS Percentage 80.65%
Ka/Ks Ratio 0.19124 (Ka = 0.1251, Ks = 0.6539)

Lrrc29 ENSRNOG00000025231 (Rat)

Gene Details

leucine rich repeat containing 29 (Lrrc29), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000056415, Rat)

Protein Percentage 60.07%
CDS Percentage 66.79%
Ka/Ks Ratio 0.34825 (Ka = 0.35, Ks = 1.005)

Genome Location

Sequence Coding sequence

Length: 915 bp    Location: 19093378..19110738   Strand: +
Raw sequence   
>XM_004843053.1
ATGGCGGAGTCGCTGCCCCTGGAGATGCTCACATATATTCTGAGCTTCCTGCCTCTGTCAGATCAGAAAGAGGCCTCCCTTGTGAGTCGGGCTTGGTACTGTGCAGCCCAGAATGCCCTTCGGGAGCAACCAGCCCTTACCTCTCTGGACCTCAGTGGCTGCTCAGAACTGACTGATGGGGCACTCTTGGCTGTGAGCCAGGGCCTTCGGTACCTGCAGCGCCTAAGCCTGGGGAAGCTGCAGCGGCTGACAGACACAGGGTGCACAGCCCTGGGGGGGCATGTGGCAATTTCGGAGCCTGGACATGGCGAGTGCTGCTTGGTGAGTGGGCAGGGACTGGCCCAGGCCCTGGGGCCAGTGCATGGAGCTCCACCCCCACTGATCACCCTCAGGCTGGCCTACTGTTCTTCACTGAAGCTGTACTCAGAGCAGGAACATCAGGCTTCAGACCCCGAGGAACCCTTTCTCAAGCCACAGGGACCCTCCCTGCTCATGCTGCAGGCCCTGCAGGAGTTGGACCTCACAGCCTGCAGCAAGCTGACTGATGCCAGTCTGGCCAAGGTGCTCCAGTTCCCCCAGCTGAGGCAACTGTCACTGAGCCTATTGCCAGCGCTCACAGACAACGGTTTGGTGGCTGTGGCCAGGGGCTGCCCTAGCCTGGAGCACTTGTCACTGAGTCACTGCAGCTGCCTCAGTGATGACGATTGGGCCCAGGCAGCTGGGTCCTGGCTCAGGCTGCAGCACCTCAACTTATCCAGCTGCAGTCAGCTCACAGAGCAAACACTGGACACCAATAGCCAGGTGTGCAAGCAGCTCCAAGTGTTGGATGTGGCCATGTGTCCTGGTATCAATGTGGTGGCCGTCAGGCACTTCCAAGCCCAGCTGCCTCAGGTGACTTGTGAGGGGCTGACCTGA

Related Sequences

XP_004843110.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 29 [Heterocephalus glaber]

Length: 304 aa      View alignments
>XP_004843110.1
MAESLPLEMLTYILSFLPLSDQKEASLVSRAWYCAAQNALREQPALTSLDLSGCSELTDGALLAVSQGLRYLQRLSLGKLQRLTDTGCTALGGHVAISEPGHGECCLVSGQGLAQALGPVHGAPPPLITLRLAYCSSLKLYSEQEHQASDPEEPFLKPQGPSLLMLQALQELDLTACSKLTDASLAKVLQFPQLRQLSLSLLPALTDNGLVAVARGCPSLEHLSLSHCSCLSDDDWAQAAGSWLRLQHLNLSSCSQLTEQTLDTNSQVCKQLQVLDVAMCPGINVVAVRHFQAQLPQVTCEGLT