Sequence details NCBI ID: XM_004842964.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdh3
Gene Name cadherin 3, type 1, P-cadherin (placental), transcript variant X3
Entrez Gene ID 101720155

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDH3 ENSCPOG00000009166 (Guinea pig)

Gene Details

cadherin 3, type 1, P-cadherin (placental)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008230, Guinea pig)

Protein Percentage 90.26%
CDS Percentage 90.31%
Ka/Ks Ratio 0.16181 (Ka = 0.0522, Ks = 0.3228)

CDH3 ENSG00000062038 (Human)

Gene Details

cadherin 3, type 1, P-cadherin (placental)

External Links

Gene Match (Ensembl Protein ID: ENSP00000264012, Human)

Protein Percentage 85.89%
CDS Percentage 85.6%
Ka/Ks Ratio 0.13883 (Ka = 0.077, Ks = 0.5549)

Cdh3 ENSMUSG00000061048 (Mouse)

Gene Details

cadherin 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000079613, Mouse)

Protein Percentage 83.11%
CDS Percentage 82.53%
Ka/Ks Ratio 0.13233 (Ka = 0.0968, Ks = 0.7314)

Cdh3 ENSRNOG00000020129 (Rat)

Gene Details

cadherin 3 (Cdh3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027273, Rat)

Protein Percentage 82.86%
CDS Percentage 82.94%
Ka/Ks Ratio 0.14649 (Ka = 0.0979, Ks = 0.668)

Genome Location

Sequence Coding sequence

Length: 2436 bp    Location: 17658616..17616302   Strand: -
Raw sequence   
>XM_004842964.1
ATGACTTTCCTCATTGGGCCTCTCGCGTCCTTCCTCCTCCTCCAGGCACAGGTTTGCTGGCTGCTGGGCGCAGCCTCTCAGCCTTGCCCGGCGGGCGTTGGGGAGGCTGGAGTGACCTTGGAGGCGGGAGGCAGAGAGGTGCTGCCGGGCCAGGCGCTGGAGAAAGTAGCTTTCACCGGCTGCCCTGGGCAAGAGTTGGCCTCGCTTGGGACTGATAACAACGACTTCACTGTGTTGAGCGGGGGAACAGTCCAGGAAAAGAAAGCTTTGAAGACCTCCCCATCCAAACGCATTTTACGAAGACGCAAGAGAGAATGGGTGGTCCCGCCAATATCTGTCCTTGAGAATGGCAAGGGGCCCTTCCCCAAGAGGCTGCATCAGCTCAAATCTGATAAGGACAAAGGCACCAAGATTTTCTACAGCATCACAGGGCCTGGGGCAGACAGCCCCCCAGAGGGCATCTTTGACATCGACAAGGAGACAGGCTGGTTGCTGTTGAATAAGCCACTGGACCGGGAGAAGATCGCCAAGTATGAGCTTTTCGGTCATGCTGTGTCAGAGAACGGTGCCTCCGTGGAGGAGCCCAGGAACATCTCCATCATTGTGACGGACCAGAATGACCACAAACCCAAGTTCACCCAGGAGGTCTTCCATGGGAGTGTCCTGGAGGGGGCACGGCCTGGCACCTCTGTGATGCAGGTGACAGCCACAGATGAGGATGATGCCATTGACACCAACAATGGCGTGGTTGCTTACTCCATCCACAGCCAGGAGCCAAAGGACCCAAACGACCTCATGTTCACCGTCCACCGGAGCACTGGCAGCATCAGTGTCATCTCCAGCGGCCTGGACCGGGAGAAAGTCCCCGAGTACACGCTGACCATTCAGGCCACAGACATGGACGGGGAAGGCTCCACCACCACAGCAGTGGCCATAGTGGAAATCCTTGATGCCAATGACAATGCTCCTGTGTTTGACACCCAAAAGTATGAGGCTCGGGTGCCTGAGAATGGAGTGGGCCATGAGGTACAGAGACTGACAGTGACCGACGTGGATGCCCCCAACTCTCCAGCATGGCGTGCGGTCTACCGCATTGTGGGAGGGGACAATGGGGACCATTTTACCATCACCACCCACCCTGAGAGCAACCAAGGCATCCTGACAACCAGGAAGGGCTTGGATTTTGAGGCCCAAAACCAACACACACTTTATGTAGAAGTGACAAATGAGGCTCCCTTTGTGGTGAAGCTCCCAACCTCCACAGCCACTGTCGTGATCCATGTGGAGGATGTGAATGAGGCCCCTGTATTTGTCCCACCCTCCAAAGTCATTGAGGCCCAGGAGGGTATCTCCGTTGGGGAGGCTGTCTGCATCTACACTGCACAGGATCCCGACAAACAGGATCAGAAGATCAGCTACCACATCCTGAGAGACCCAGCTGGGTGGCTAGCAATGGACCCAGACAGTGGGCAAGTCACTGCTGCAGGCCTCCTAGACCGCGAGGATGAGCGATTTGTGAGGAACAACATCTACGAAGTCATGGTCTTGGCCACTGATAATGGGAACCCTCCCGCCACTGGCACAGGAACCCTCCTGCTAACACTTACTGACATCAACGACCACGGCCCGGTCCCTGAGCCCCATCAGATCATCATCTGCAACGAAAACCCAGTGCCCCAAGTGTTGAACATCACAGACAAGGACCTGTCCCCCAACTCCTACCCTTTCCAGGCCCAGCTCAAATTCGACTCAGACATCTACTGGATGGCAGAGGTTAATGAAAAAGGAGACACAGTGGCCTTGTCCCTGAAGAAATTCCTGAAGCAAGACGCATATGATGTACACCTTTCTCTGTCTGACCATGGCAACAATGAACAGCTGACCGTGATCAGAGCCATCGTGTGTGACTGCCACGGCCATGTGGAGTCCTGCTCCAAGCCCTGGAAGGTCCTCCTGTTGGTGCTCCTCTTGTTGGTGAGAAAGAAGCAGAAGGTCAAAGAGCCTCTTCTGCTCCCAGAAGATGACACCCGTGACAATGTCTTCTATTATGGTGAAGAGGGTGGTGGCGAAGAGGACCAGGACTATGACATTACCCAACTCCACCGGGGCTTAGAGGCCAGGCCTGAGGTGGTTCTCCGCAATGATGTGGCACCAACCTTCATCCCCACACCCATGTACCGTCCCCGGCCAGCCAACCCAGATGAAATCGGCAACTTCATCATCGAGAACCTGAAGGCGGCCAACACGGACCCCACAGCCCCACCCTACGACTCGCTGTTGGTGTTCGACTACGAAGGCAGTGGCTCTGATGCTGCCTCCCTAAGCTCCCTCACATCCTCGGCCTCGGACCAGGACCAGGACTATGACTATCTGAACGAGTGGGGCAGTCGCTTCAAGAAGCTGGCAGACATGTATGGGGGTGGGGAGGACGACTAG

Related Sequences

XP_004843021.1 Protein

Cdh3 PREDICTED: cadherin-3 isoform X3 [Heterocephalus glaber]

Length: 811 aa      View alignments
>XP_004843021.1
MTFLIGPLASFLLLQAQVCWLLGAASQPCPAGVGEAGVTLEAGGREVLPGQALEKVAFTGCPGQELASLGTDNNDFTVLSGGTVQEKKALKTSPSKRILRRRKREWVVPPISVLENGKGPFPKRLHQLKSDKDKGTKIFYSITGPGADSPPEGIFDIDKETGWLLLNKPLDREKIAKYELFGHAVSENGASVEEPRNISIIVTDQNDHKPKFTQEVFHGSVLEGARPGTSVMQVTATDEDDAIDTNNGVVAYSIHSQEPKDPNDLMFTVHRSTGSISVISSGLDREKVPEYTLTIQATDMDGEGSTTTAVAIVEILDANDNAPVFDTQKYEARVPENGVGHEVQRLTVTDVDAPNSPAWRAVYRIVGGDNGDHFTITTHPESNQGILTTRKGLDFEAQNQHTLYVEVTNEAPFVVKLPTSTATVVIHVEDVNEAPVFVPPSKVIEAQEGISVGEAVCIYTAQDPDKQDQKISYHILRDPAGWLAMDPDSGQVTAAGLLDREDERFVRNNIYEVMVLATDNGNPPATGTGTLLLTLTDINDHGPVPEPHQIIICNENPVPQVLNITDKDLSPNSYPFQAQLKFDSDIYWMAEVNEKGDTVALSLKKFLKQDAYDVHLSLSDHGNNEQLTVIRAIVCDCHGHVESCSKPWKVLLLVLLLLVRKKQKVKEPLLLPEDDTRDNVFYYGEEGGGEEDQDYDITQLHRGLEARPEVVLRNDVAPTFIPTPMYRPRPANPDEIGNFIIENLKAANTDPTAPPYDSLLVFDYEGSGSDAASLSSLTSSASDQDQDYDYLNEWGSRFKKLADMYGGGEDD