Sequence details NCBI ID: XM_004842924.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pmfbp1
Gene Name polyamine modulated factor 1 binding protein 1
Entrez Gene ID 101706707

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PMFBP1 ENSCPOG00000027263 (Guinea pig)

Gene Details

polyamine modulated factor 1 binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014539, Guinea pig)

Protein Percentage 72.54%
CDS Percentage 80.51%
Ka/Ks Ratio 0.49037 (Ka = 0.2001, Ks = 0.4081)

PMFBP1 ENSG00000118557 (Human)

Gene Details

polyamine modulated factor 1 binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000237353, Human)

Protein Percentage 77.31%
CDS Percentage 82.62%
Ka/Ks Ratio 0.25311 (Ka = 0.1387, Ks = 0.548)

Pmfbp1 ENSMUSG00000031727 (Mouse)

Gene Details

polyamine modulated factor 1 binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034162, Mouse)

Protein Percentage 71.4%
CDS Percentage 76.43%
Ka/Ks Ratio 0.1796 (Ka = 0.1939, Ks = 1.0796)

Pmfbp1 ENSRNOG00000014505 (Rat)

Gene Details

polyamine modulated factor 1 binding protein 1 (Pmfbp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000019577, Rat)

Protein Percentage 70.21%
CDS Percentage 76.56%
Ka/Ks Ratio 0.22055 (Ka = 0.2045, Ks = 0.9271)

Genome Location

Sequence Coding sequence

Length: 3123 bp    Location: 14376012..14322865   Strand: -
Raw sequence   
>XM_004842924.1
ATGCTAAAGCTTAAAGGAGAACTGAGAGCTTCCAAGGGACTGAAAGGTGAGGTGGGTGAGAGAGACAGAGAAGTGGAAAGCCTGAACAGTAAGCTCCTGAGCCTACAACTTGACATCAAGAATCTGCATGATGTCTGTAAAAGGCAAGGGAAGACTTTGCAGGAGAACCAGCTTTGTGTGGAGGAGGCCATGATGAACAGCAGCCATAACAGGAAGCAGGCACAGACATTAGTAATTGAGGAGTCCCAGATTGATTTTGGGTCTGCTAAAGAGTGTCATCTGAGACAACTTCAGCAACTGAAGAAAAAACTGCTGGCCCTTCAGCAAGAACTGGAGTTTCGCACAGATGAGTTGCAGACTTCCTACTGTTCTCTCCTGCAGTATCAGTCCATCCTGGAGAAGCAGACTTTTGACCTGGTTCTTCTTCACCATCACTGCAAGCTGAAAGAAGATGAGGTGATTCTCTATGAAGAGGAAATGGGAAATCATAATGAGAACACAGGAGAGAAGCTTCATTTGGCACAAGAGCAGCTTGCCTTGGCTGGGGACAAGATTGTCTCCCTAGAAAGAAGCTTAAACCTCTACAGGAATAAATATCATACTTCCCTAAGCAACATTGAGTTACTGGAGTGCCAAGTGAAGATGTTAGAAGGGGAGCTCAGCGGGCTCATCAGTCAGGAACCAGAGAACACGGGTGATCACCCAAAAGTTCATATATACACTTCTTCCTGCATGATTCAAGAGCATCAGGAGACCCTGAAACAACGCTCTGAAGTCTGGCAAAAGGTCTCTGAACAGGATGATCTAATCCAGGAGCTTCGAAATAAGCTAGCCTGCAGTAATGCTTTGGTTCTGGAGCGTGAAAAGGCTTTGATAAAATTACAAGCAGATTTTGCTTCCTATACAGCCACTCACAGACATCCTCCTAGCTCCTCAGAAGACTGTGAAGACATAAAAACGATCCTGAAGCACCTGCAGGAGGAGAAGGACAGCCAGTGCCTGCATGTGGAGGAGTACCAGAACCTCGTGAAGGACCTGCGCATGGAACTGGAAGCCGTGTCGGAGCAGAAGAAAAACATCATGAAGGACATGATGAAGCTCGAGCTGGAATTGCATGGGCTGAGGGGGGAGACATCTGCCCACATCGAGAGGAAGGATAAGGAAACCACCATCCTGCTACACCAGCTGCAGGAGCTGCAGTTGCAGTTTTCAGAGACCCAGAAGCTTGCTTTGAAGAAAGACAAGTTGCTCCAAGAGAAGGATAAAATGCTGCATGAGCTAGAGAAGAAGCTGAGCCACATTCAGAACTATTTCAGGAAGAAGGAGATGGAGCTGGAGAGCCAGCAGTGTATAACGAAGGAACTCGAAATGACCAGGAAAGAGGCAAACAAGGACGAGAGCAAAGTGGAGTGCGAAGCCCTAAAGGCTGATGTCCAGAAGCTGACAGACAGTCTGGAAGAGGCCAAGCAGCAGCAGAGGCTGGCAGCTCAACAAGCAGCACAATATAAGGAAAAGACCAGGCTGGCAGAGCAGAACCTGGACGGTGTTGAGAAGAAACTTCAGAGCTGCATTTATGAGGACAAGCAGAAGGCAAACACCATCCAAGAGCAGCAAAGAGAGCTGCAGAAGCTGCAGAAGGAGTCCTTGCTGGCTGAAGAGGAACTGTCACATAACAGGAAACGGGTAGAAGAGCTAACCTCAGAAGTTGCTGAGATTCTAAAGAAGTTGGAAAATGCAGACAAGGAAAGGAGAAAGCTTCAGAAGACAGTGGCTGAGGACGAAGTAAAAATAAATGAATTACAAGATCAGGCCAGACACTTTCAGCACCAGCACAAGGACCTATTATCTGCCAAAAGCAAGCTAGAAGATGACATTCAGGAGGTAAGGAAGTTACTGGAGGAGAAAAAAGAGCAGCTGAAAAAGAGCAAAGAACAGGAGAAGCTGCTGGAGGAAGAACTTGAGGTTGTTCGACAGGAAGAAAAAAAGAAGGACAAAATGTTAAAAGAGAAGCTGAGAAAGCTAGAAGAGGAAAACGAGAATCTCCGAGAAGAGTTGGTGCATTATTCTACACAACTGGAAGCCTCTATCAGCAAATACAATGCCACCCAGCAAGTCATTCAAGAATTGAACATACAGATAACCCACCAGAAGGTATCCATAATGAGTCTGAAGACCCAGCTAGAGCAGGCCGTGAAAAAAGAGAACCATTATCTCCAGACCATGGTCACTAAAGAAGTCTATGAAGACTTATCCCGGAAGTCAGCTGCCTGCCAAGATGACCTGACACAAGCCCTGGAGAAGCTCAATCATGCAACCTCAGAAACCAAGAGCCTGCAGCGAAACTTGTTACAGACCCAAGAGAGGAAAACTCAGCTGGAAGATGAAATTCTTGCTTATGAGGAGAGAATGAAAAAGCTCAATGTGGAATTAAAAAAACTGCAAGGCTTCCACCAGGAGAGTGAGATAGAGGTGCATGCCTTTGACAAAAAGCTAGAGGAGATGAGCAACCAGGTGATGCAGTGGCAGAAGCAGCACCAGAATGACCTCAAGATGCTGGCAGCGAAAGAGACTCAGCTCAGGGAGTTCCAGGAGGAAATGGCCACCCTGAAAGAGAACCTCCTTGCAGATGAGAAGGAGCCCTGCTGCCTGCCTCCTCGATCTGTGCCCAAAGACCCCTGTAGGCTCCACCGAGACAACGATCAGATTATGTGCAACATGGAACAGTGGGCAAAAGAGCAAAAGATCACCAATGAGAAACTAGGAAACAAGCTCCGTGAACAGGTCAAATACATCGCTAAGCTGACTGGTGAAAAGGACCACCTCCATAATGTAATGGTCCATCTGCAACAGGAAAACAAGAAGCTGAAGACTGAGATAGAAGAAAAGAAAATGAAAGCCGAGAACACAAGGCTGTGCAGAGCCCTAGGCCCGAGCAAACTGGAGCCCACACAAAGAGGGAAAGTGTGTGGTGCATTGGGCTGGAGGGGGACAGCCCAGGACACGGGCTGGAGAATGGGCATCACCAAGTATGTTGGGATGCCCCAGTGCTCAGGTACATCTGCCATGTCTTTTGTTACGGTGATGTTCCCCTTTTTAGTCCCATGTGCCAAAACAACAGTGTGA

Related Sequences

XP_004842981.1 Protein

Pmfbp1 PREDICTED: polyamine-modulated factor 1-binding protein 1 [Heterocephalus glaber]

Length: 1040 aa      View alignments
>XP_004842981.1
MLKLKGELRASKGLKGEVGERDREVESLNSKLLSLQLDIKNLHDVCKRQGKTLQENQLCVEEAMMNSSHNRKQAQTLVIEESQIDFGSAKECHLRQLQQLKKKLLALQQELEFRTDELQTSYCSLLQYQSILEKQTFDLVLLHHHCKLKEDEVILYEEEMGNHNENTGEKLHLAQEQLALAGDKIVSLERSLNLYRNKYHTSLSNIELLECQVKMLEGELSGLISQEPENTGDHPKVHIYTSSCMIQEHQETLKQRSEVWQKVSEQDDLIQELRNKLACSNALVLEREKALIKLQADFASYTATHRHPPSSSEDCEDIKTILKHLQEEKDSQCLHVEEYQNLVKDLRMELEAVSEQKKNIMKDMMKLELELHGLRGETSAHIERKDKETTILLHQLQELQLQFSETQKLALKKDKLLQEKDKMLHELEKKLSHIQNYFRKKEMELESQQCITKELEMTRKEANKDESKVECEALKADVQKLTDSLEEAKQQQRLAAQQAAQYKEKTRLAEQNLDGVEKKLQSCIYEDKQKANTIQEQQRELQKLQKESLLAEEELSHNRKRVEELTSEVAEILKKLENADKERRKLQKTVAEDEVKINELQDQARHFQHQHKDLLSAKSKLEDDIQEVRKLLEEKKEQLKKSKEQEKLLEEELEVVRQEEKKKDKMLKEKLRKLEEENENLREELVHYSTQLEASISKYNATQQVIQELNIQITHQKVSIMSLKTQLEQAVKKENHYLQTMVTKEVYEDLSRKSAACQDDLTQALEKLNHATSETKSLQRNLLQTQERKTQLEDEILAYEERMKKLNVELKKLQGFHQESEIEVHAFDKKLEEMSNQVMQWQKQHQNDLKMLAAKETQLREFQEEMATLKENLLADEKEPCCLPPRSVPKDPCRLHRDNDQIMCNMEQWAKEQKITNEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKTEIEEKKMKAENTRLCRALGPSKLEPTQRGKVCGALGWRGTAQDTGWRMGITKYVGMPQCSGTSAMSFVTVMFPFLVPCAKTTV