Sequence details NCBI ID: XM_004842857.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pdpr
Gene Name pyruvate dehydrogenase phosphatase regulatory subunit, transcript variant X1
Entrez Gene ID 101715422

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDPR ENSCPOG00000020169 (Guinea pig)

Gene Details

pyruvate dehydrogenase phosphatase regulatory subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015584, Guinea pig)

Protein Percentage 96.65%
CDS Percentage 93.77%
Ka/Ks Ratio 0.07344 (Ka = 0.0176, Ks = 0.2394)

PDPR ENSG00000090857 (Human)

Gene Details

pyruvate dehydrogenase phosphatase regulatory subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000288050, Human)

Protein Percentage 93.39%
CDS Percentage 89.41%
Ka/Ks Ratio 0.07429 (Ka = 0.0328, Ks = 0.4418)

Pdpr ENSMUSG00000033624 (Mouse)

Gene Details

pyruvate dehydrogenase phosphatase regulatory subunit

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000046639, Mouse)

Protein Percentage 91.12%
CDS Percentage 86.64%
Ka/Ks Ratio 0.08206 (Ka = 0.0459, Ks = 0.5587)

Pdpr ENSRNOG00000022593 (Rat)

Gene Details

pyruvate dehydrogenase phosphatase regulatory subunit (Pdpr), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000032023, Rat)

Protein Percentage 90.66%
CDS Percentage 86.52%
Ka/Ks Ratio 0.09343 (Ka = 0.0508, Ks = 0.5435)

Genome Location

Sequence Coding sequence

Length: 2637 bp    Location: 12492966..12423910   Strand: -
Raw sequence   
>XM_004842857.1
ATGTTTCACCGGTTCCTGTCGATTATCCGAAGACAAAGAACCAGCCCAAGATGCCAGAACTGGTGCTTGGCAAGAAGCAGTGCGTCGGCTGCCGAGGCCCATTCTGTCACCCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGGGGTGGAATCATGGGCACATCCGTGGCCTATCACCTCTCCAGGATGGGGTGGAAGGACATCGTTCTTTTGGAGCAGGGCAGGCTGGCCGCTGGCTCTACCAGGTTCTGTGCTGGCATCCTGAGCACTGCCAGGCACTTGACCATCGAGCAGAAGATGGCCGACTATTCAAACAAACTCTACGAACAGCTAGAGCAAGAAACAGGGATCCAAACAGGTTACATAAGGACAGGCTCGGTCTTTCTGGCCCAAACACAGGACCGGCTGATCTCCTTGAAGCGCATCAACTCAAGACTGAATGTTATAGGCATCCCTTCTGAGATCATCTCCCCCAAGAAGGTGGCTGAACTGCACCCTTTCCTCAACGTGCACGACCTGGTGGGGGCCATGCACGTTCCTGAGGATGCGGTGGTATCCTCCGCCGATGTGGCCCTGGCCCTGGCAAGTGCTGCCTCCCAGAATGGTGTTCAGATTTATGACCGAACAAGTGTTCTTCATGTAATGGTCAAAAAAGGTCAAGTTACTGGTGTGGAGACAGATAAAGGACAGATTGAGTGCCAGTATTTTGTCAACTGTGCTGGTCAGTGGGCATACGAGCTGGGTCTGTCCAACGAGGAGCCGGTTAGTATCCCGTTACATGCCTGTGAACACTTCTACCTTCTGACTCGCCCCTTGGAGACCCCTCTGCAGAACAACACACCAACTATCGTGGACCCTGATGGAAGAATTTATATTCGGAACTGGCAGGGTGGCATCTTGTCTGGGGGCTTTGAGAAGAACCCGAAACCTATTTTTACCGAGGGCAAGAACCAGCTGGAAATTCAGAATCTGCAGGAAGACTGGGATCACTTTGAGCCCCTACTGAGTTCCCTCCTGCGTCGGATGCCAGAACTGGAGATGCTGGAGATCCTGAAGCTGGTGAACTGTCCCGAGACCTTCACGCCAGACATGAGGTGCATCATGGGCGAGTCCCCTGTGGTCCGTGGCTACTTTGTCCTGGCAGGGATGAACTCGGCCGGCCTGTCCTTTGGTGGAGGGGCTGGGAAGTACCTTGCTGAATGGATAGTACATGGTTATCCTTCAGAAAACGTCTGGGAATTGGACTTGAAACGCTTTGGAGCCCTCCAGAGCAGCCGTACCTTTCTGCGCCACCGGGTCATGGAAGTCATGCCTTTGATATACGACCTGAAGGTTCCCCGTTGGGACTTCCAGACTGGTAGGCAGCTGCGTACTTCTCCGCTGTATGACCGGCTGGATGCACAAGGGGCCAGATGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCACCTGACAAGGACCTCCTCGCGTTGGAGCAGAGCAAGACTTTCTATAAGCCAGACTGGTTTGACATTGTGGAGTCTGAAGTCAAGTGCTGTAAGGAGGCAGTGTGTGTTATCGACATGTCCTCCTTCACAAAGTTTGAGATAACATCCACTGGGGACCAGGCTTTAGAAGTTCTGCAGTTCCTCTTCTCCAACGACCTGGACGTGCCCGTGGGCCACATCGTGCACACAGGCATGCTCAACGAGGCTGGGGGCTATGAGAACGATTGCAGCATCGCACGCCTGAGCAAGCGCAGTTTCTTCATGATCTCTCCAACCGACCAACAGGTCCACTGCTGGGCCTGGCTCAGGAAGCACATGCCCGAGGACAGCAGCCTGGTGCTGGAGGATGTCACCTGGAAGTACACAGCCCTCAACCTGATTGGCCCGCGAGCTGTGGATGTGCTGTCTGAACTGTCCTACGCCCCTATGACTCCAGACCACTTCCCGACTCTGTTTTGCAAGGAGATGAGCGTGGGCTACGCAAACGGGATCCGGGTGATGAGCATGACCCACACCGGAGAGCCAGGTTTCATGCTGTACATCCCCATCGAGTACGCTCTGCATGTGTACAACGAAGTGATGAATGTTGGGCAGAAGTACGGGATCCGGAATGCCGGGTATTATGCCCTTCGCAGCCTCCGAATTGAGAAGTTTTTTGCCTTCTGGGGCCAGGATTTAAACACACTCACCACCCCGCTGGAATGTGGACGAGAGTCTCGGGTGAAGCTGGAGAAGGGCATGGACTTCATGGGCCAGGATGCCCTGCTGCAGCAGAAGCAGAACGGGGTATACAGGCGCTTCACCCTGTTCATCCTGGAAGACCACGACACGGACCTGGACCTCTGGCCGTGGTGGGGGGAGCCTATTTACCGGAACGGCCAGTACGTTGGCCAGACCACCAGCAGTGCCTACAGCTACACTCTGGAGCGCCATGTGTGCCTGGGCTTCGTGCACAACTTTTCCGAGGACACTGGGGAGGAGCAGGTGGTCACAGCAGATTTTGTCAACCGGGGAGAATACGAGATCGACATCGCGGGCTGCCGATTCCAGGCCAAGGCCAAACTCTACCCTGTTGCCTCCTTCTTTACACACAAGCGCCGAAAGGATGATGTGGAGCTAAGTGACTTGCATGGGAAGTAA

Related Sequences

XP_004842914.1 Protein

Pdpr PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like isoform X1 [Heterocephalus glaber]

Length: 878 aa      View alignments
>XP_004842914.1
MFHRFLSIIRRQRTSPRCQNWCLARSSASAAEAHSVTLPAQAQVVICGGGIMGTSVAYHLSRMGWKDIVLLEQGRLAAGSTRFCAGILSTARHLTIEQKMADYSNKLYEQLEQETGIQTGYIRTGSVFLAQTQDRLISLKRINSRLNVIGIPSEIISPKKVAELHPFLNVHDLVGAMHVPEDAVVSSADVALALASAASQNGVQIYDRTSVLHVMVKKGQVTGVETDKGQIECQYFVNCAGQWAYELGLSNEEPVSIPLHACEHFYLLTRPLETPLQNNTPTIVDPDGRIYIRNWQGGILSGGFEKNPKPIFTEGKNQLEIQNLQEDWDHFEPLLSSLLRRMPELEMLEILKLVNCPETFTPDMRCIMGESPVVRGYFVLAGMNSAGLSFGGGAGKYLAEWIVHGYPSENVWELDLKRFGALQSSRTFLRHRVMEVMPLIYDLKVPRWDFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPDKDLLALEQSKTFYKPDWFDIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQALEVLQFLFSNDLDVPVGHIVHTGMLNEAGGYENDCSIARLSKRSFFMISPTDQQVHCWAWLRKHMPEDSSLVLEDVTWKYTALNLIGPRAVDVLSELSYAPMTPDHFPTLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMNVGQKYGIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGRESRVKLEKGMDFMGQDALLQQKQNGVYRRFTLFILEDHDTDLDLWPWWGEPIYRNGQYVGQTTSSAYSYTLERHVCLGFVHNFSEDTGEEQVVTADFVNRGEYEIDIAGCRFQAKAKLYPVASFFTHKRRKDDVELSDLHGK