Sequence details NCBI ID: XM_004842793.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sdr42e1
Gene Name short chain dehydrogenase/reductase family 42E, member 1, transcript variant X6
Entrez Gene ID 101720255

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SDR42E1 ENSCPOG00000003481 (Guinea pig)

Gene Details

short chain dehydrogenase/reductase family 42E, member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003146, Guinea pig)

Protein Percentage 90.08%
CDS Percentage 87.53%
Ka/Ks Ratio 0.11308 (Ka = 0.0535, Ks = 0.4732)

SDR42E1 ENSG00000184860 (Human)

Gene Details

short chain dehydrogenase/reductase family 42E, member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000332407, Human)

Protein Percentage 83.46%
CDS Percentage 85.75%
Ka/Ks Ratio 0.22676 (Ka = 0.0902, Ks = 0.3979)

Sdr42e1 ENSMUSG00000034308 (Mouse)

Gene Details

short chain dehydrogenase/reductase family 42E, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000044457, Mouse)

Protein Percentage 82.44%
CDS Percentage 80.32%
Ka/Ks Ratio 0.13557 (Ka = 0.1084, Ks = 0.7998)

Genome Location

Sequence Coding sequence

Length: 1182 bp    Location: 5494863..5504483   Strand: +
Raw sequence   
>XM_004842793.1
ATGGACTCCCAAAGATCTCCAAAGGAAACTGTCCTCATTACAGGAGGAGGTGGCTACTTTGGTTTCCGCCTCGGCTGTGCGCTGAGCCGGAAGGGAGTCCGTGTGATTCTGTTTGACATCAGCAGCCCTGCTCAGACCATCCCACAAGGAATGAAGTTTGTACTTGGAGACATCCGCCACCTTTCTGACGTGGAGAGGGCCTTCCAGGACTCAGACATCTCATGTGTGTTCCACATTGCCTCTTATGGCATGTCGGGGCGGGAGCAACTGAACCAAAACCTGATTGAGGAAGTCAACGTGGGTGGCACCGACAATGTCCTGCAGGCCTGCTGCAGGAGAGGGGTTCCCAGACTGGTGTACACGAGCACTTTCAATGTCATCTTTGGAGGCCAAGTCATCAGAAATGGAGATGAGTCCCTGCCTTACCTGCCGCTTCACCTGCACCCTGATCACTACTCTCGGACCAAATCTATTGCAGAGAAGAAGGTGCTAGAGGCAAATGGCTCTGCCCTGGAGACAGGAGATAATGTCTTAAGAACCTGTGCTCTGAGACCAGCTGGCATCTATGGGCCTGGAGAACAAAGGCACCTTCCCAGGATAGTGAGTTACATTGAGAGGGGCCTGTTCAGTTTTGTGTATGGTGACCCCAGCAGCCTGGTTGAGTTTGTCCATGTGGATAACTTGGTGCAGGCACACATTCTAGCCTCAGAGGCCCTGAAGGTTGATAAGGGCCACACTGCCTCTGGGCAGCCCTACTTCATCTCAGATGGCAGACCAGTGAACAACTTTGAGTTCTTCCGGCCTTTGGTTGAGGGCCTGGGCTACAAGTTCCCATCCACCCGCCTGCCACTCACCCTGGTCTACTGCTTTGCTTTCCTGACAGAGATGTCCCACTTCATCATTGGCCGACTCTACAACTTCCAGCCTTTCCTCACCCGCACTGAAGTTTATAAAACTGGTGTCACACATTACTTCAGCCTAAAGAAAGCCAAGATAGAGCTTGGTTATGAGCCTCAGCCGTTTGACCTGCAGGAAGTAGTAGACTGGTTTAAAGCCCATGGTCATGGCCGAAGTCCTGGAAATGGAGACTCAGAGTTTCTTCTTTGGCATGGGCTGTTGATCTTACTCTTGGTTCTATCAGTTTTCACCTGGCTACCACCTACTCTGTTTCTGTCAGTGTGA

Related Sequences

XP_004842850.1 Protein

Sdr42e1 PREDICTED: short-chain dehydrogenase/reductase family 42E member 1 isoform X6 [Heterocephalus glaber]

Length: 393 aa      
>XP_004842850.1
MDSQRSPKETVLITGGGGYFGFRLGCALSRKGVRVILFDISSPAQTIPQGMKFVLGDIRHLSDVERAFQDSDISCVFHIASYGMSGREQLNQNLIEEVNVGGTDNVLQACCRRGVPRLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEANGSALETGDNVLRTCALRPAGIYGPGEQRHLPRIVSYIERGLFSFVYGDPSSLVEFVHVDNLVQAHILASEALKVDKGHTASGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSTRLPLTLVYCFAFLTEMSHFIIGRLYNFQPFLTRTEVYKTGVTHYFSLKKAKIELGYEPQPFDLQEVVDWFKAHGHGRSPGNGDSEFLLWHGLLILLLVLSVFTWLPPTLFLSV