Sequence details NCBI ID: XM_004842651.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdh15
Gene Name cadherin 15, type 1, M-cadherin (myotubule), transcript variant X1
Entrez Gene ID 101707671

Database interlinks

Part of NW_004624746.1 (Scaffold)

For more information consult the page for NW_004624746.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDH15 ENSCPOG00000022725 (Guinea pig)

Gene Details

cadherin 15, type 1, M-cadherin (myotubule)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016255, Guinea pig)

Protein Percentage 82.05%
CDS Percentage 82.76%
Ka/Ks Ratio 0.13592 (Ka = 0.1083, Ks = 0.797)

CDH15 ENSG00000129910 (Human)

Gene Details

cadherin 15, type 1, M-cadherin (myotubule)

External Links

Gene Match (Ensembl Protein ID: ENSP00000289746, Human)

Protein Percentage 79.26%
CDS Percentage 81.18%
Ka/Ks Ratio 0.09938 (Ka = 0.1135, Ks = 1.1416)

Cdh15 ENSMUSG00000031962 (Mouse)

Gene Details

cadherin 15

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034443, Mouse)

Protein Percentage 77.52%
CDS Percentage 77.74%
Ka/Ks Ratio 0.0892 (Ka = 0.1319, Ks = 1.4786)

Cdh15 ENSRNOG00000027954 (Rat)

Gene Details

cadherin 15 (Cdh15), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000034685, Rat)

Protein Percentage 77.78%
CDS Percentage 77.82%
Ka/Ks Ratio 0.08251 (Ka = 0.1326, Ks = 1.6069)

Genome Location

Sequence Coding sequence

Length: 2358 bp    Location: 617582..604894   Strand: -
Raw sequence   
>XM_004842651.1
ATGGACACCGCGCTCCTCCTGGCCCTCGGGCTGCTGGCACAGAGCCTTGGCTTGTCCTGGGGGGTCCCCAGGCGCCCCAGCACCCTGTACCCCTGGCGCCGGCCACCTGCACTGGGCCGAGTTCGGAGAGCCTGGGTCATCCCACCCATTAGCGTGTCAGAGAACTACAAGGGCCTGCCCTACATGCTGGTGCAGATCCGGTCCGACAAGCGGCAGCCAGGCGGGGTCATCTACAGCATCCAGGGCCCCGGTGTGGATGAGGAGCCCCTGGGCCTCTTCTCTGTGGAGAAGTTCTCAGGGCGGGTGTTCCTCAACGCGGAGCTGGACCGGGAGAAGACGTCCTCCTACAGGCTCAAGGTCTTTGCCCTGGACCGGGGAGGGTCTGTCCTGGAGGAGCCCACTGACCTGGAGATCGTGGTTGTGGATCAGAACGACAACCGGCCAGCCTTCGTGCAGGAGGTGTTCGCTGGCCGCGTGCTGGAAGGCGCAGCCCCAGGCACCTATGTGACCCGGGCCGAGGCCACCGACGCCGATGACCCAGACACAGACAATGCGGCGCTGCACTACTCCATCCTGGCACAGGGGAGCCCCGAGCTCTTCAGCATCCATGAGCGCACGGGCGAGATCCGCACTGTACACGTGGGGCTGGACCGTGAGGCGGTCACCACGTACAACCTGACGCTGCAGGTGGCAGACATGTCTGGACAAGGCCTCAGTGCCACAGCGTCGGCCATCATCTCCGTGGACGACATCAACGACAATGCCCCTGAGTTCACCAGGGGCAAGCTCCTCATGGAGGTCACAGAGGCTGTCAGTGGAGTGGATGTGGGGCGGCTGGAGGTGGAGGACAGGGACCTGCCTGGCTCCCCCAACTGGGTGGCCAACGTCACTATCCTGGAGGGTGACCCCGAGGGACACTTCGGCATCAGAACGGACCCCAGGACCAACGAGGGTGTGCTGTCTGTGGTGAAGCCCCTGGACTATGAGAGCCATGCACACTATGAGCTCAGGGTGTCTGTGCAGAATGAGGCCCCACTACAGGCAGCACCCCCCCGGGCCCAGCGGGGCCAGGCCACAGTCAGCATCCGGGTGCAGGACGTCAACGAGGCACCTGTGTTCCTCGAGAACCCGCTGAGAACCAGCCTGGCAGAGGGGGCACCCCCCGGGACCTTCGTGGCCAGCTTCTCTGCACAAGACCCCGACACCGTGCAGCTGCAGAGGGTCAGCTACTCCAAGGACTATGACCCTGAGGACTGGCTGCAGGTGGACGGAGCCACTGGCCAGATCCAGACGCGAAGGGTTCTGAGCCCGGCCTCCCCCTTCCTGAAGGACGGCTGGTACCGGGCCATCGTCCTCGCCCTCGACGACGGCTCGCCGCCTCGTACGGCCACCGGCACGCTGTCCGTGGAGATCCTGGCGGTGAACGACCACGCGCCTGCACTGGCGCCGCTGGCGGCTCCAAGCCTGTGCAGCGAGCCGGAACGCGGCCCCGGGCTGCTGCTGGGCGCCACTGACCAGGACCTGCCGCCGCACGGGGCGCCCTTCCGCTTCCGCCTCAGCCCCGCCGAGCCCGGGCTGGGCCGCAACTGGAGCCTCAGCCACGTCAACGGGACCCACGCGCGCCTGCGGCCGCGGCACACTCTCCCCGAGGGCCTGCACCGCCTCCGCCTGCTGCTCCAGGACTCCGGACAGCCGCCGAAGGAACGCGAGCAGCCGCTCAACGTCACCCTGTGTCGCTGCGGGCTCAGTGGCGCCTGTCTGCCCGGGGCCGCGGCGCTCAGGGCAGGGGGCGCGGGCCTTGGGCTGGGCGTGCTGGCGGTGGCGCTGGGGAGCGCTGCGGTGCTGCTGCTGCTGGTTCTGCTCGTGCTGCTCAGAGCGCGGTTCCGGCAGCGGTCGCGGGACAGGAGCCTGCTGCGCGGCCTGCAGGACGACTACCTTCGGGACAACATTCTCAACTACGACGAGCAGGGAGGCGGGGAGGAGGACCAGGACGCCTACGATATAAGCCAGCTGCGCCACCCCTGGGAGCCAGTGTTCCCGAGCTTCCCCCCGGGCCGGCCGCCCCTACGCCGCGAGGCCCCCTTGGGCCGCGGGCGCCCCCAGCCGCCCCGCGCGCCGCCCGCCAGCCCCGCGGACATCGCCGGCTTCATCCGAGACGGCCTGCAGGCTGCGGACTGCGACCCCAGCGTGCCGCCCTACGACACGGCGCTCATCTACGACTACGAGGGGGAAGGCTCCGTGGCGGGGACGCTGAGCTCCCCCGTGTCCAGCGTGGGCGAGGAGGACCAGGACTACGACTACCTCCAAGACTGGGGCCCGCGCTTCGCCCGACTGGCGGACCTGTACGGACACCCGTGA

Related Sequences

XP_004842708.1 Protein

Cdh15 PREDICTED: cadherin-15 isoform X1 [Heterocephalus glaber]

Length: 785 aa      View alignments
>XP_004842708.1
MDTALLLALGLLAQSLGLSWGVPRRPSTLYPWRRPPALGRVRRAWVIPPISVSENYKGLPYMLVQIRSDKRQPGGVIYSIQGPGVDEEPLGLFSVEKFSGRVFLNAELDREKTSSYRLKVFALDRGGSVLEEPTDLEIVVVDQNDNRPAFVQEVFAGRVLEGAAPGTYVTRAEATDADDPDTDNAALHYSILAQGSPELFSIHERTGEIRTVHVGLDREAVTTYNLTLQVADMSGQGLSATASAIISVDDINDNAPEFTRGKLLMEVTEAVSGVDVGRLEVEDRDLPGSPNWVANVTILEGDPEGHFGIRTDPRTNEGVLSVVKPLDYESHAHYELRVSVQNEAPLQAAPPRAQRGQATVSIRVQDVNEAPVFLENPLRTSLAEGAPPGTFVASFSAQDPDTVQLQRVSYSKDYDPEDWLQVDGATGQIQTRRVLSPASPFLKDGWYRAIVLALDDGSPPRTATGTLSVEILAVNDHAPALAPLAAPSLCSEPERGPGLLLGATDQDLPPHGAPFRFRLSPAEPGLGRNWSLSHVNGTHARLRPRHTLPEGLHRLRLLLQDSGQPPKEREQPLNVTLCRCGLSGACLPGAAALRAGGAGLGLGVLAVALGSAAVLLLLVLLVLLRARFRQRSRDRSLLRGLQDDYLRDNILNYDEQGGGEEDQDAYDISQLRHPWEPVFPSFPPGRPPLRREAPLGRGRPQPPRAPPASPADIAGFIRDGLQAADCDPSVPPYDTALIYDYEGEGSVAGTLSSPVSSVGEEDQDYDYLQDWGPRFARLADLYGHP