Details from NCBI annotation

Gene Symbol Col9a3
Gene Name collagen, type IX, alpha 3
Entrez Gene ID 101707537

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL9A3 ENSCPOG00000002720 (Guinea pig)

Gene Details

collagen, type IX, alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002469, Guinea pig)

Protein Percentage 88.84%
CDS Percentage 85.97%
Ka/Ks Ratio 0.23031 (Ka = 0.0796, Ks = 0.3456)

COL9A3 ENSG00000092758 (Human)

Gene Details

collagen, type IX, alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000341640, Human)

Protein Percentage 88.97%
CDS Percentage 84.22%
Ka/Ks Ratio 0.17937 (Ka = 0.083, Ks = 0.4625)

Col9a3 ENSMUSG00000027570 (Mouse)

Gene Details

collagen, type IX, alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000128718, Mouse)

Protein Percentage 89.12%
CDS Percentage 83.33%
Ka/Ks Ratio 0.13298 (Ka = 0.0749, Ks = 0.5633)

Col9a3 ENSRNOG00000009531 (Rat)

Gene Details

Protein Col9a3

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013105, Rat)

Protein Percentage 89.12%
CDS Percentage 82.7%
Ka/Ks Ratio 0.11746 (Ka = 0.0765, Ks = 0.6513)

Genome Location

Sequence Coding sequence

Length: 2043 bp    Location: 28591546..28610346   Strand: +
>XM_004841025.1
ATGGCCCGCGCGCCCACCCTGGCCCTGCTCCTGCTGGGACGGCTCCTGGCAGCCGCCACCGCACAGAAAGTGGGGCTCCCTGGGCCCCCGGGGGCCCCGGGGCCACCCGGGAAGCCGGGCACGGACGGCATTGACGGAGAAGCTGGTCCTCCAGGTCTGCCTGGGCCCCCGGGATCGAAGGGGACCCCGGGGAAACGAGGGAAGCCCGGAGAGGCAGGACTGCCAGGACTTCCAGGTGTGGACGGTCTGACTGGGCGGGACGGACCTGCTGGACCCAAAGGTGCCCCTGGAGAACGGGGAAGCCTGGGACCCCCGGGGCCGCCTGGGCTGGGGGGCAAAGGCCTCCCTGGACCCCCCGGAGAGGCAGGTGTGAGCGGCCTCCCCGGTGGGATGGGCCTCCGAGGTCCTCCGGGACCCTCTGGACTTCCAGGCCTGCCTGGGCCCCCAGGACCTCCGGGACCTCCTGGACAGCCTGGGGTCCTCCCTGAAGGTGCTGCTGACCTACAGTGCCCTGCCGTCTGCCCTCCAGGCCCCCCCGGGCCTCCAGGAATGCCAGGGTTTAAGGGGCCCACCGGCCACAAAGGAGAACAGGGAGAAGTTGGCAAGGACGGCGAGAAGGGTGACCCCGGCCCACCCGGTCCTGCTGGTGTTCCAGGCGCCGTGGGGCTGCAGGGTCCCCGAGGATTAAGAGGGCTGCCAGGGCCACTGGGGCCCCCTGGGGACCGGGGTCCCATTGGGTTCCGAGGGCCGCCTGGCGCCCCAGGGTCTCCCGGGAAAGTGGGTGACAGAGGTGGGAGGGGCCCTGAGGGCTTCCGAGGCCCCAAGGGTGACCTTGGTAGACCTGGTCCCAAAGGAATCCCTGGCGTGGCCGGGCCAGGTGGGGAGCTGGGTGTGCCAGGCACGGATGGCCGGGACGGCATGCCAGGACTCGATGGCGAGAAGGGAGAGGCCGGTCGCCATGGTGCCCTGGGAGAGAAGGGCCCCAATGGGCTGCCGGGCCTCCCTGGACGAGCAGGGTCCAAAGGCGAGAAGGGAGAACTGGGCACAGCCGGGGAGCTGGGCGAGGCTGGCCCCTCTGGAGAGCCTGGCATGCCCGGAGACATCGGCATGCCCGGGGGGCACGGCGAGGCTGGCCACAGGGGCTCCATGGGGGCCCTCGGCCCACAAGGTCCTCCCGGGGCCCCCGGAGTCCGAGGCTTCCAGGGCCGAAAGGGCAGCATAGGAGACCTTGGCCTCCCGGGTCCGCAGGGCCTCCGTGGTGAAGTGGGCGACCGGGGCCCAGGAGGCACTGCAGGCCCGAAGGGAGACCAGGGCATTGCGGGTTCCGATGGCCTTCCTGGGGACAAAGGAGAGCTGGGCCCCAGTGGTTCAGCTGGACCCAAAGGAGAGTCTGGAAGTCGAGGGGAGCTAGGCCCCAAAGGCATCCAGGGACCCAATGGCACCAGTGGCGTCCAGGGCGCCCCTGGCCCACCTGGGCCCGTGGGCCTCCAGGGTGTGCAGGGCATCCCTGGGATCACCGGGAATCCTGGAGTTCCGGGGAAAGAAGCCAGTGAGCAGCGCATCAGGGAGCTGTGTGGGGGCGTGATCAGCGAGCAAATTGCACAGTTAGCTGCACACCTGAGGAAGCCTTTAGCACCGGGCTCCATCGGTCGGCCTGGTCCAGCTGGTCCTCCAGGGCCTCCTGGCCCTCCAGGCTCCATCGGCCACCCTGGTATTCGAGGGCCTCCCGGATACCGCGGTCCCACGGGGGAGCTGGGAGACCCTGGCCCCAGAGGAGGTCAGGGCGACAGAGGAGACAAGGGTGCAGTGGGCGCAGGGCTGAACGGCCCCGCCGGAGACCAGGGACTCCAAGGGTCACAAGGCGTGCCCGGCATCAGCAGAGACGGCCGGGATGGTGCTCATGGTGAGCCGGGGCTTCCTGGAGATCCTGGGCTTGCCGGTGCTGTCGGGGCTCAGGGGACACCAGGGATCTGTGACACTTCCGCCTGCCAAGGAGCTGTGTTAGGAGGGAATGGGGAAAAATCTGGTCCTCGCAGCGCATAG

Related Sequences

XP_004841082.1 Protein

Col9a3 PREDICTED: collagen alpha-3(IX) chain [Heterocephalus glaber]

Length: 680 aa      View alignments
>XP_004841082.1
MARAPTLALLLLGRLLAAATAQKVGLPGPPGAPGPPGKPGTDGIDGEAGPPGLPGPPGSKGTPGKRGKPGEAGLPGLPGVDGLTGRDGPAGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGLPGGMGLRGPPGPSGLPGLPGPPGPPGPPGQPGVLPEGAADLQCPAVCPPGPPGPPGMPGFKGPTGHKGEQGEVGKDGEKGDPGPPGPAGVPGAVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGAPGSPGKVGDRGGRGPEGFRGPKGDLGRPGPKGIPGVAGPGGELGVPGTDGRDGMPGLDGEKGEAGRHGALGEKGPNGLPGLPGRAGSKGEKGELGTAGELGEAGPSGEPGMPGDIGMPGGHGEAGHRGSMGALGPQGPPGAPGVRGFQGRKGSIGDLGLPGPQGLRGEVGDRGPGGTAGPKGDQGIAGSDGLPGDKGELGPSGSAGPKGESGSRGELGPKGIQGPNGTSGVQGAPGPPGPVGLQGVQGIPGITGNPGVPGKEASEQRIRELCGGVISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGIRGPPGYRGPTGELGDPGPRGGQGDRGDKGAVGAGLNGPAGDQGLQGSQGVPGISRDGRDGAHGEPGLPGDPGLAGAVGAQGTPGICDTSACQGAVLGGNGEKSGPRSA