Sequence details NCBI ID: XM_004840986.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdh4
Gene Name cadherin 4, type 1, R-cadherin (retinal), transcript variant X1
Entrez Gene ID 101726465

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDH4 ENSCPOG00000005520 (Guinea pig)

Gene Details

cadherin 4, type 1, R-cadherin (retinal)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004973, Guinea pig)

Protein Percentage 93.16%
CDS Percentage 88.97%
Ka/Ks Ratio 0.04074 (Ka = 0.035, Ks = 0.8581)

CDH4 ENSG00000179242 (Human)

Gene Details

cadherin 4, type 1, R-cadherin (retinal)

External Links

Gene Match (Ensembl Protein ID: ENSP00000353656, Human)

Protein Percentage 92.22%
CDS Percentage 88.39%
Ka/Ks Ratio 0.04064 (Ka = 0.0348, Ks = 0.8561)

Cdh4 ENSMUSG00000000305 (Mouse)

Gene Details

cadherin 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000000314, Mouse)

Protein Percentage 92.55%
CDS Percentage 85.21%
Ka/Ks Ratio 0.0278 (Ka = 0.0346, Ks = 1.2444)

Cdh4 ENSRNOG00000008976 (Rat)

Gene Details

cadherin 4

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000029177, Rat)

Protein Percentage 89.87%
CDS Percentage 83.24%
Ka/Ks Ratio 0.0438 (Ka = 0.0587, Ks = 1.3403)

Genome Location

Sequence Coding sequence

Length: 2742 bp    Location: 27331484..27858447   Strand: +
Raw sequence   
>XM_004840986.1
ATGACGGCGAGCTCTGGGCTGCTCCTCGCGCTGCTCTCGCTCTGCGGCGCGCTCCGGGCCCATAATGAGGATCTTACAGCCAGAGAGACCTGCAAGGCTGGCTTCTCGGAGGAGGACTACACAGCGTTAATCTCCCCCAATATTCTGCAGGGAGAGAAGCTCCTCAAAGTGAAGTTCAGCAGCTGCTTGGGGAACAAGGGGACGCAGTATGAGACCAACAGTGTGGACTTCAAAGTCGGGGCAGACGGGACCGTCTTCGCCACTCGGGAGCTGCAGATCCCCTCTGAGCAGGTGGCCTTCACGGTGACAGCCAGGGACCACCAGACGGCCAAGCAATGGGACGCCATGGTGCGGCTGCTGGTGGCCCAGACCTGGACCTCGAACTCAGGACGCAAGAAAGGAAAAAACGTGGACCTGGACCCCGCTCAGCCCCCCCAAGACATACTGCTACCGTGGCCCCAACGGCAGAGCTCCAGCGGCCTGAGGCGGCAGAAACGGGACTGGGTCATCCCCCCCATCAACGTGCCGGAGAACTCCCGCGGCCCCTTCCCGCAGCAGCTCGTGAGGATCCGTTCCGACAAAGACAATGACATCCCCATCCGGTACAGCATCACAGGCGTGGGCGCGGACCAGCCGCCCATGGAGGTCTTCAGCATCGACTCCATGTCTGGGCGCATGTACGTCACACGGCCCATGGACCGGGAAGAGCGAGCCTCTTACCATCTTCGAGCCCACGCTGTGGACATGAACGGCAACAAGGTGGAGAACCCCATTGACCTGTACATCTACGTCATCGACATGAACGACAACCGCCCTGAGTTCATCAACCAGGTCTACAATGGCTCTGTGGACGAGGGCTCCAAGCCAGGAACCTACGTGATGACAGTCACAGCCAACGACGCCGATGACAGCACCACAGCCAACGGAATGGTGCGGTACCGGATTGTAACCCAGACACCACAGAGTCCGTCTCAGAACATGTTCACCATCAACAGCGAAACAGGGGACCTGGTGACAGTGGCAGCTGGCCTGGACCGTGAGAAAGTCCAGCAGTACACAGTCATCGTCCAGGCCACCGACATGGAGGGGAATCTCAACTATGGCCTCTCGAACACAGCCACAGCGATCATCTCGGTGACAGACGTGAACGACAACCCGCCAGAGTTCACCTCGAGCACATTTGCAGGAGAGGTCCCCGAGAACCGCGTGGAGACGGTGGTCGCAAACCTGACGGTGATGGACCGCGACCAGCCCCACTCGCCCAACTGGAACGCCGTCTACCGCATCATCAGCGGAGACCCCTCGGGCCACTTCAGCGTCCGCACCGACCCCATCACCAACGAGGGCATGGTCACCATGGCGAAGGCGGTGGACTATGAGCTGAACAGGGCCTTCATGTTGACCGTGATGGTGTCCAACCAGGCACCCCTGGCCAGCGGGATCCAGATGTCCTTCCAGTCCACGGCGGGTGTGACCATCTCTGTCACGGACATCAACGAGGCACCCTACTTTCCGTCCAACCGCAAGCTGATCCGCCTGGAGGAGGGTGTGCCAGCTGGCACCGCGCTCACCACCTTCTCTGCCGTGGACCCTGACCGCTTCATGCAGCAGGCTGTGAGGTACTCAAAGCTGTCCGACCCAGCCAACTGGCTGCACATCAATGCCTCCAACGGTCAGATCACCACGGCGGCTGTCCTGGACCGAGAGTCCCTCTACATCAGAAACAACGTCTACGAGGCAACCTTCCTGGCAGCTGACAACGGGATCCCCCCGGCCAGTGGCACCGGTACTCTGCAGATCTATCTTATCGACATCAACGACAATGCCCCGGAGCTGCTGCCCAAGGAGGCGCAGGTCTGCGAGAAGCCAGGCCTGAACGCCATCAACATCACTGCGGCCGACGCCGACATCGACCCCAACATCGGCCCCTACGTCTTCGAGCTGCCCTTCATCCCAGCCACTGTGCGAAAAAACTGGACCATTACCCGCCTGAATGGTGACTATGCCCAGCTGAGCTTGCGCATCCTGTACCTGGAGGCCGGGGTGTACGAGGTCCCCATCACCGTCACAGACTCTGGGAACCCTCCCCTGTCCAACACATCCGTCATCAAGGTCAAGGTGTGCCCGTGCGATGAAAACGGTGACTGCACCACCATCGGCGCGGTGGCCGCGGCCGGCCTGGGCACAGGCGCCATAGTGGCCATCCTCATCTGCATCGTCATCCTGCTGACCATGGTCCTGCTGTTCGTCATGTGGATGAGGCGGCGGGGGAAGGAGCGGCTCACCAAGCAGCTGCTCATCGACCCCGAGGACGACGTGCGGGACAACATCCTCACCTACGACGAGGAAGGCGGCGGCGAGGAGGACCAGGACTATGACCTCAGCCAGCTGCAGCAGCCGGAAGCCATGGAGCACGTGCTGAGCAAGGCCCCCGGGGTGCGGCGGGTGGATGAGCGGCCGGTGGGCGCGGAGCCCCAGTACCCCGTGAGGCCCGTGGTGCCCCACCCAGGTGACATCGGCGACTTTATCAATGAGGGGCTGCGAGCTGCTGACAACGATCCCACGGCGCCCCCCTATGACTCCTTGCTGGTCTTTGACTACGAAGGGAGTGGCTCCACTGCGGGCTCGGTGAGCTCCCTGAACTCGTCCAGCTCCGGGGACCAAGACTACGATTACCTCAACGACTGGGGGCCCCGGTTCAAGAAGCTGGCAGACATGTACGGGGGCAGCGAGGAGGACTAG

Related Sequences

XP_004841043.1 Protein

Cdh4 PREDICTED: cadherin-4 isoform X1 [Heterocephalus glaber]

Length: 913 aa      View alignments
>XP_004841043.1
MTASSGLLLALLSLCGALRAHNEDLTARETCKAGFSEEDYTALISPNILQGEKLLKVKFSSCLGNKGTQYETNSVDFKVGADGTVFATRELQIPSEQVAFTVTARDHQTAKQWDAMVRLLVAQTWTSNSGRKKGKNVDLDPAQPPQDILLPWPQRQSSSGLRRQKRDWVIPPINVPENSRGPFPQQLVRIRSDKDNDIPIRYSITGVGADQPPMEVFSIDSMSGRMYVTRPMDREERASYHLRAHAVDMNGNKVENPIDLYIYVIDMNDNRPEFINQVYNGSVDEGSKPGTYVMTVTANDADDSTTANGMVRYRIVTQTPQSPSQNMFTINSETGDLVTVAAGLDREKVQQYTVIVQATDMEGNLNYGLSNTATAIISVTDVNDNPPEFTSSTFAGEVPENRVETVVANLTVMDRDQPHSPNWNAVYRIISGDPSGHFSVRTDPITNEGMVTMAKAVDYELNRAFMLTVMVSNQAPLASGIQMSFQSTAGVTISVTDINEAPYFPSNRKLIRLEEGVPAGTALTTFSAVDPDRFMQQAVRYSKLSDPANWLHINASNGQITTAAVLDRESLYIRNNVYEATFLAADNGIPPASGTGTLQIYLIDINDNAPELLPKEAQVCEKPGLNAINITAADADIDPNIGPYVFELPFIPATVRKNWTITRLNGDYAQLSLRILYLEAGVYEVPITVTDSGNPPLSNTSVIKVKVCPCDENGDCTTIGAVAAAGLGTGAIVAILICIVILLTMVLLFVMWMRRRGKERLTKQLLIDPEDDVRDNILTYDEEGGGEEDQDYDLSQLQQPEAMEHVLSKAPGVRRVDERPVGAEPQYPVRPVVPHPGDIGDFINEGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGDQDYDYLNDWGPRFKKLADMYGGSEED