Sequence details NCBI ID: XM_004840881.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sec23b
Gene Name Sec23 homolog B (S. cerevisiae), transcript variant X4
Entrez Gene ID 101719091

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEC23B ENSCPOG00000002406 (Guinea pig)

Gene Details

Sec23 homolog B (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002189, Guinea pig)

Protein Percentage 95.83%
CDS Percentage 91.48%
Ka/Ks Ratio 0.062 (Ka = 0.021, Ks = 0.3379)

SEC23B ENSG00000101310 (Human)

Gene Details

Sec23 homolog B (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000338844, Human)

Protein Percentage 94.92%
CDS Percentage 89.61%
Ka/Ks Ratio 0.05823 (Ka = 0.0245, Ks = 0.4208)

Sec23b ENSMUSG00000027429 (Mouse)

Gene Details

SEC23B (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000028916, Mouse)

Protein Percentage 95.18%
CDS Percentage 88.22%
Ka/Ks Ratio 0.04451 (Ka = 0.0237, Ks = 0.5317)

SEC23B ENSRNOG00000008411 (Rat)

Gene Details

Protein Sec23b; SEC23B (S. cerevisiae) (Predicted), isoform CRA_b

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000062590, Rat)

Protein Percentage 91.17%
CDS Percentage 86.75%
Ka/Ks Ratio 0.10436 (Ka = 0.0529, Ks = 0.5071)

Genome Location

Sequence Coding sequence

Length: 2307 bp    Location: 19222628..19255512   Strand: +
Raw sequence   
>XM_004840881.1
ATGATGGCAACATATCTGGAGTTCATTCAGCAGAATGAAGAACGTGATGGGGTGCGCTTCAGTTGGAATTTGTGGCCATCCAGCCGTCTGGAGGCCACGCGAATGGTGGTCCCGCTGGCCTGTCTTCTTACTCCTTTGAAGGATCGTCCAGACCTGCCTCCTGTACAGTATGAACCTGTGTTTTGCAGCAGGCCCACCTGCAAAGCTGTCCTCAATCCACTTTGTCAGGTTGATTATCAAGCAAAACTTTGGGCTTGTAATTTCTGTTTCCAAAGAAACCAGTTCCCCCCATCGTATGCAGGCATATCTGAGGTGAACCAGCCTGCCGAGCTCATGCCCCAGTTCTCTACAATTGAGTACGTGGTACAGCGAGGTCCTCGGTCCCCTCTGATCTTCCTCTATGTGGTGGACACGTGCCTGGAGGAAGATGACCTTCAGGCCCTCAAAGAGTCCCTGCAGATGTCCCTGAGTCTCCTTCCTCTGGAGGCCCTGGTGGGCCTCATCACTTTTGGGAGGATGGTGCAGGTTCATGAGCTGAGCTGTGAAGGAATCTCCAAAAGTTATGTCTTCCGCGGGACCAAGGATTTAACCGCAAAGCAAATACAGGATATGCTGGGCCTGTCCAAGCCAGCCATGCCCATGCAGCAAACAAGGCCTGCACAGCCTCAGGAGCACCCTTTTGTTTCCAGCAGGTTTCTGCAGCCCATTCACAAGATTGACATGACCCTCACAGATCTCCTCGGGGAGCTGCAGAGGGACCCATGGCCGGTCACTCAGGGAAAGAGGCCTCTGCGGTCCACTGGGGTTGCGTTGTCCATTGCCGTTGGCCTGCTGGAGGGTACTTTTCCAAACACGGGAGCCAGGATCATGCTGTTCACTGGAGGGCCCCCCACGCAGGGGCCTGGCCTGGTGGTGGGAGATGAATTAAAGGTTCCCATTCGTTCCTGGCATGATATTGAGAAAGATAATGCACGGTTCATGAAAAAGGCAACAAAGCACTATGAGATGCTCGCTAATAGAGCTGCTACAAATGGTCACTGCATTGATATTTATGCTTGTGCCCTTGATCAAACTGGACTTTTGGAGATGAAGTGTTGTACAAATCTTACTGGAGGCCACATGGTGATGGGAGATTCTTTCAACACCTCCCTCTTCAAGCAGACCTTCCAAAGAATTTTTAGCAAAGATTTTAACGGAGATTTCCGAATGGCTTTTGGTGCTACTTTGGAAGTAAAGACCTCTCGGGAGCTGAAGGTTTCAGGAGCCATTGGTCCATGTGTGTCTCTGAACATGAAGGGACCCTGTGTGTCAGAAAATGAGCTTGGTGTAGGAGGCACGAGTCAGTGGAAGATCTGTGGCCTAGATCCCACGTCTACACTTGGCATCTACTTCGAAGTCGTCAATCAGCACAATGCCCCAGTCCCCCAAGGAAGCAGAGGTGCCATCCAGTTTGTCACACAATATCAGCATTCCAGCACACTGAAACGCATCCGTGTGACCACCATTGCCCGAAATTGGGCAGATGTGCAGAGCCAGCTCCAGCTCATAGAGGCTGCGTTTGACCAGGAGGCTGCAGCGGTCCTGATGGCGAGGCTTGGAGTGTTCCGGGCAGAGTCGGAGGAGGGCCCTGACGTGCTCCGATGGCTGGACCGGCAGCTCATCCGACTGTGTCAGAAGTTTGGACAATATAACAAAGAAGATCCCACTTCTTTTAGGCTATCAGATGCCTTTTCTCTATATCCTCAGTTCATGTTCCACCTCAGAAGATCGCCCTTTCTCCAGGTGTTTAACAACAGTCCTGATGAGTCGTCCTATTACAGACACCACTTTGCACGGCAGGACCTGACCCAGTCCCTCATCATGATCCAGCCCATCCTCTACTCCTACTCCTTCCATGGCCCGCCAGAGCCGGTGCTCTTGGACAGCAGCAGCATTCTAGCTGACAGAATCTTGCTGATGGACACTTTCTTCCAAATTGTCATTTATCTTGGTGAGACCATAGCCCAGTGGCAGAAGGCCGGCTACCAGGACATGCCTGAGTACGAGAACTTCAAGCACCTGCTGCAGGCTCCACTGGATGATGCGCAGGAGATCCTGCAGGCACGCTTCCCCATGCCGCGCTATGTCCACACAGAGCATGGCGGCAGCCAGGCTCGATTTCTTTTGTCCAAAGTGAACCCATCTCAGACACACAATAACCTGTATGCTTGGGGACAGGAAACCGGAGCGCCCATCCTGACGGATGACGTCAGCCTGCAGGTGTTCATGGACCATCTGAAGAAGCTGGCCGTGTCCAGTGCCTGTTAG

Related Sequences

XP_004840938.1 Protein

Sec23b PREDICTED: protein transport protein Sec23B isoform X4 [Heterocephalus glaber]

Length: 768 aa      View alignments
>XP_004840938.1
MMATYLEFIQQNEERDGVRFSWNLWPSSRLEATRMVVPLACLLTPLKDRPDLPPVQYEPVFCSRPTCKAVLNPLCQVDYQAKLWACNFCFQRNQFPPSYAGISEVNQPAELMPQFSTIEYVVQRGPRSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPLEALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLSKPAMPMQQTRPAQPQEHPFVSSRFLQPIHKIDMTLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGLVVGDELKVPIRSWHDIEKDNARFMKKATKHYEMLANRAATNGHCIDIYACALDQTGLLEMKCCTNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGDFRMAFGATLEVKTSRELKVSGAIGPCVSLNMKGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNAPVPQGSRGAIQFVTQYQHSSTLKRIRVTTIARNWADVQSQLQLIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDAFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWQKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYVHTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC