Sequence details NCBI ID: XM_004840725.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Atrn
Gene Name attractin, transcript variant X1
Entrez Gene ID 101697196

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ATRN ENSCPOG00000007193 (Guinea pig)

Gene Details

attractin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006485, Guinea pig)

Protein Percentage 96.59%
CDS Percentage 93.98%
Ka/Ks Ratio 0.08025 (Ka = 0.0172, Ks = 0.2149)

ATRN ENSG00000088812 (Human)

Gene Details

attractin

External Links

Gene Match (Ensembl Protein ID: ENSP00000262919, Human)

Protein Percentage 94.1%
CDS Percentage 91.85%
Ka/Ks Ratio 0.10882 (Ka = 0.0296, Ks = 0.2724)

Atrn ENSMUSG00000027312 (Mouse)

Gene Details

attractin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000028781, Mouse)

Protein Percentage 92.42%
CDS Percentage 89.23%
Ka/Ks Ratio 0.1151 (Ka = 0.0433, Ks = 0.3761)

Atrn ENSRNOG00000021240 (Rat)

Gene Details

attractin (Atrn), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028847, Rat)

Protein Percentage 92.06%
CDS Percentage 88.55%
Ka/Ks Ratio 0.10779 (Ka = 0.0449, Ks = 0.4163)

Genome Location

Sequence Coding sequence

Length: 4275 bp    Location: 4559146..4741711   Strand: +
Raw sequence   
>XM_004840725.1
ATGGTGGCTGCGGCGGCGGCGACTGAGGCGAGGCTGAGGAGGACGGCGAAGACTGCAGCACCCGCGGGCAGGAAGGGCGGGCAGCACCGAGACTGGGACGTGACTGGGACTGGGAGGCCGGGGCTAGGGGCCGGGCTGCGTCCCCCGCGGCGGCTGTCGCCGTCGCTGCCACCTTGGCGGCTTCTGCTGCTGCTCCCGCCGCTGCTCCTGCTGCTGCCCTGGGAGGCCGAGGCCGCTGCTGCGGCGGCGGCGGTGTCGAGCTCAGCCGCAGCTGAGGCGAAGGAATGTGACCGGCCTTGTGTCAACGGCGGTCGCTGCAACCCTGGTACCGGCCTGTGCGTCTGCCCCACCGGCTGGGTGGGCGAGCAATGCCAGCACTGCGGGGGCCGCTTCAGACTAACTGGATCTTCTGGGTTTGTAACAGATGGACCTGGAAATTATAAATATAAAACGAAGTGCACATGGCTCATTGAAGGACAACCAAATAGAATAATGAGACTTCGTTTTAATCATTTTGCTACGGAGTGTAGTTGGGACCATTTATATGTTTATGATGGAGACTCAATTTATGCACCACTAATTGCTGCCTTTAGTGGCCTCATTGTTCCCGAGAGAGATAGCAACGAGACTGTACCTGAGGTTGTTGTCACATCAGGTTATGCCCTGCTGCATTTTTTTAGTGATGCTGCTTATAATTTGACTGGATTTAATATCACTTACAATTTTGACATGTGTCCAAACAATTGCTCAGCCCGAGGAGTGTGTAAGATCAGTAACAGCAGCAACACTGTTGAATGTGAGTGTTATGAAAACTGGAAAGGTGAATCGTGTGACATTCCTTACTGTACAGACAACTGTGGCTTTCCTCACCGAGGCATCTGCAATTCAAGTGATGTCAGAGGATGCTCCTGCTTCTCTGAGTGGCAGGGTCCTGGATGTTCAGTTCCTGTGCCAGCTAACCAGTCATTTTGGATGCGAGAGGAATGTTCTAATTTAAAGCTCCCCAGAGCTTCTCATAAAGCTGTGGTCATTGGAAATATAATGTGGATTGTCGGAGGATATATGTTCAATCACTCAGATTACAACATGGTTCTAGCGTATGACCTTGTTTCTAAAGAATGGCTTCCGCTGAACCGTTCTGTGAACAATGTGGTTGTGAGATATGGTCATTCTTTAGCATTATATAAGGATAAAATTTACATGTATGGAGGAAAAATTGATTCAACAGGGAATGTGACCAATGAGTTGAGAGTGCTTCATATTCATAATGAGTCGTGGGCGTTGTTGACCCCAAAGGCAAAGGAACAGTATGCAGTGGTTGGGCACTCAGCACACATCATTACACTGAAAACTGGCCGAGTGGTCATGCTGGTCATTTTTGGTCACTGCCCTCTCTATGGCTATATAAGTAGTGTGCAGGAATATGACTTGGATAAGAACACATGGAATATATTACAGACCCAGGGTGCTCTTGTACAAGGGGGCTATGGCCACAGCAGTGTTTATGATCATAAGACCAAGGCCCTGTATATTCATGGTGGCTACAAGGCTTTCAGTGCAAATAAATACCGGCTCACTGATGACCTCTACAGATACGAAGTGGATACCCAAATGTGGACCATTCTTAAGGATAGCAGATTTTTCCGTTACTTGCACACAGCTGTGATAGTGAGTGGAACCATGCTGGTGTTTGGAGGAAATACACACAATGACACATCTATGAGCCATGGTGCCAAATGTTTCTCTTCAGATTTCATGGCTTATGACATTGCTTGTGACCGTTGGTCAGTGCTTCCCAGACCTGATCTCCACCATGATGTCAACAGATTTGGCCACTCAGCAGTCTTACACAACAGTACCATGTATGTGTTTGGTGGTTTCAACAGCCTGCTCCTCAGTGACATCTTGGTATTCACCTTGGAACAGTGTGAAACACATCGGAGTGAAGCTGCTTGCATAGCAGCAGGACCTGGTGTCCGGTGTGTGTGGGATGTGGAAACATCTCAGTGTGTCTCCTGGGAACTGGCAACAGAAGAACAAGCCAAAAAGTTAAAATCAGAATGTTTTTCCAAAAGAACTCTTGACCATGACAAATGTGACCAGAACACAGATTGCTACAGCTGCACAGCCAACACCAACGACTGCCACTGGTGCAGTGACCATTGTGCCCCTAGGAACCACAGCTGCACGGAAGGCCAGATCTCCATTTTCAAGTATGAGAATTGCCCCAAGGATAACCCCATGTACTACTGTAATAAGAAGACCAGTTGCAGGAGCTGCGCCCTTGATCAGAACTGCCAGTGGGAGCCCCGGAATCAGGAGTGCATTGCCCTGCCTGAAAACATTTGTGGCACGGGCTGGCATTTGGTTGGAAACTCATGTTTGAAAATTACTACTGCCAAGGAGAATTATGACAATGCTAAATTGTCCTGTAGAAATCACAATGCCTTTTTGGCTTCTCTAACAACCCAGAAGAAGGTGGAATTTGTCCTTAAGCAGCTGCGAATGATGCAGTCATCACAGACCATGTCCAAGCTCACCTTAACCCCATGGGTTGGCCTGAGGAAGATCAATGTGTCCTACTGGTGTTGGGAAGATATGTCTCCGTTTACAAATAGCCTACTGCAGTGGATGCCATCTGAGCCTAGCGATGCTGGCTTCTGTGGTATCTTGTCAGAACCCAGTACTCGAGGATTGAAGGCTGCAACCTGCATCAACCCACTGAATGGCAGCATCTGTGAAAGGCCTGCAAACCACAGTGCCAAGCAATGCCGGACACCATGTGCCTTGCGGACGGCGTGCGGGGAGTGCACCAGCAGTAGCTCTGAGTGTATGTGGTGCAGCAACATGAAGCAGTGCGTGGACTCCAATGCCTATGTGGCTTCCTTCCCTTTTGGCCAGTGCATGGAGTGGTATACAATGAGCAGCTGTCCCCCTGAAAATTGTTCAGGCTACTGTACATGCAGTCATTGCTTGGAGCAGCCAGGCTGTGGCTGGTGTACTGATCCCAGCAATACTGGGAAAGGGAAGTGCATAGAGGGCTCCTATAAAGGACCAGTGAAGATGCCTTCTCAGGCCTCTACAGGAATCACCTACCCACAGCCCCTTCTGAATTCCAGCATGTGTCTAGAGGATGGCAGATACAACTGGTCTTTCATTCACTGTCCAGCTTGCCAGTGCAATGGCCACAGCAAATGTATCAACCAGAGTATCTGTGAGAAGTGTGAGAACCTGACCACCGGCAAGCACTGCGAGACCTGCATATCTGGTTATTATGGAGACCCCACCAATGGAGGCAAATGCCAACCATGCAGGTGCAATGGGCATGCATCACTATGCAATACCAACACGGGCAAGTGCTTCTGTACCACCAAGGGCGTCAAGGGGGACGAGTGCCAGCTATGTGAGGTAGAAAATCGGTACCAAGGAAACCCTCTCAAAGGAACATGTTATTATACTCTTCTTATTGACTATCAGTTCACTTTTAGCCTGTCACAGGAAGATGACCGCTATTACACAGCCATCAATTTTGTGGCTACTCCTGATGAACAAAACAGGGATTTGGACATGTTCATCAATGCCTCTAAAAACTTCAACCTCAATATCACCTGGGCTGCCAGCTTCTCAGCTGGAACTCAAGCTGGAGAAGAGATGCCTGTTGTTTCAAAAACCAACATTAAAGAGTACAAAGATAGCTTCTCTAATGAGAAGTTTGATTTTCGCAACCACCCAAATATCACTTTCTTTGTTTATGTCAGTAATTTTACCTGGCCTGTCAAAATTCAGATCGCCTTCTCCCAGCACAGCAATTTTATGGACCTGGTACAGTTCTTCGTGACTTTCTTCAGTTGTTTCCTATCTTTGCTCCTGGTGGCTGCTGTGGTTTGGAAGATCAAACAAAGTTGTTGGGCCTCCAGGCGTAGAGAGCAACTTCTTCGAGAGATGCAGCAAATGGCCAGTCGACCCTTTGCTTCCGTAAATGTTGCCTTGGAAACAGATGAAGAGCCTCCTGACCTTATTGGGGGAAGTATAAAGACCGTTCCCAAGCCCATTGCCCTGGAGCCGTGTTTTGGCAACAAAGCTGCAGTCCTTTCTGTGTTCGTGAGGCTCCCTCGAGGCCTGGGTGGGATACCTCCTCCTGGGCAGTCAGGTCTTGCTGTGGCCAGCGCCCTGGTGGACATTTCTCAGCAGATGCCAATAGTGTACAAAGAAAAGTCAGGAGCAGTGAGAAACCGGAAGCAGCAGCCCCCTGCACAGCCTGGAACCTGCATTTGA

Related Sequences

XP_004840782.1 Protein

Atrn PREDICTED: attractin isoform X1 [Heterocephalus glaber]

Length: 1424 aa      View alignments
>XP_004840782.1
MVAAAAATEARLRRTAKTAAPAGRKGGQHRDWDVTGTGRPGLGAGLRPPRRLSPSLPPWRLLLLLPPLLLLLPWEAEAAAAAAAVSSSAAAEAKECDRPCVNGGRCNPGTGLCVCPTGWVGEQCQHCGGRFRLTGSSGFVTDGPGNYKYKTKCTWLIEGQPNRIMRLRFNHFATECSWDHLYVYDGDSIYAPLIAAFSGLIVPERDSNETVPEVVVTSGYALLHFFSDAAYNLTGFNITYNFDMCPNNCSARGVCKISNSSNTVECECYENWKGESCDIPYCTDNCGFPHRGICNSSDVRGCSCFSEWQGPGCSVPVPANQSFWMREECSNLKLPRASHKAVVIGNIMWIVGGYMFNHSDYNMVLAYDLVSKEWLPLNRSVNNVVVRYGHSLALYKDKIYMYGGKIDSTGNVTNELRVLHIHNESWALLTPKAKEQYAVVGHSAHIITLKTGRVVMLVIFGHCPLYGYISSVQEYDLDKNTWNILQTQGALVQGGYGHSSVYDHKTKALYIHGGYKAFSANKYRLTDDLYRYEVDTQMWTILKDSRFFRYLHTAVIVSGTMLVFGGNTHNDTSMSHGAKCFSSDFMAYDIACDRWSVLPRPDLHHDVNRFGHSAVLHNSTMYVFGGFNSLLLSDILVFTLEQCETHRSEAACIAAGPGVRCVWDVETSQCVSWELATEEQAKKLKSECFSKRTLDHDKCDQNTDCYSCTANTNDCHWCSDHCAPRNHSCTEGQISIFKYENCPKDNPMYYCNKKTSCRSCALDQNCQWEPRNQECIALPENICGTGWHLVGNSCLKITTAKENYDNAKLSCRNHNAFLASLTTQKKVEFVLKQLRMMQSSQTMSKLTLTPWVGLRKINVSYWCWEDMSPFTNSLLQWMPSEPSDAGFCGILSEPSTRGLKAATCINPLNGSICERPANHSAKQCRTPCALRTACGECTSSSSECMWCSNMKQCVDSNAYVASFPFGQCMEWYTMSSCPPENCSGYCTCSHCLEQPGCGWCTDPSNTGKGKCIEGSYKGPVKMPSQASTGITYPQPLLNSSMCLEDGRYNWSFIHCPACQCNGHSKCINQSICEKCENLTTGKHCETCISGYYGDPTNGGKCQPCRCNGHASLCNTNTGKCFCTTKGVKGDECQLCEVENRYQGNPLKGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWAASFSAGTQAGEEMPVVSKTNIKEYKDSFSNEKFDFRNHPNITFFVYVSNFTWPVKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQSCWASRRREQLLREMQQMASRPFASVNVALETDEEPPDLIGGSIKTVPKPIALEPCFGNKAAVLSVFVRLPRGLGGIPPPGQSGLAVASALVDISQQMPIVYKEKSGAVRNRKQQPPAQPGTCI