Sequence details NCBI ID: XM_004840691.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ptpra
Gene Name protein tyrosine phosphatase, receptor type, A, transcript variant X2
Entrez Gene ID 101716097

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PTPRA ENSCPOG00000020873 (Guinea pig)

Gene Details

protein tyrosine phosphatase, receptor type, A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020228, Guinea pig)

Protein Percentage 97.47%
CDS Percentage 94.81%
Ka/Ks Ratio 0.07154 (Ka = 0.0127, Ks = 0.1771)

PTPRA ENSG00000132670 (Human)

Gene Details

protein tyrosine phosphatase, receptor type, A

External Links

Gene Match (Ensembl Protein ID: ENSP00000369756, Human)

Protein Percentage 95.44%
CDS Percentage 92.62%
Ka/Ks Ratio 0.09389 (Ka = 0.024, Ks = 0.2553)

Ptpra ENSMUSG00000027303 (Mouse)

Gene Details

protein tyrosine phosphatase, receptor type, A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000076533, Mouse)

Protein Percentage 94.56%
CDS Percentage 90.0%
Ka/Ks Ratio 0.07476 (Ka = 0.0287, Ks = 0.3837)

Ptpra ENSRNOG00000021223 (Rat)

Gene Details

protein tyrosine phosphatase, receptor type, A (Ptpra), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000052657, Rat)

Protein Percentage 94.68%
CDS Percentage 90.17%
Ka/Ks Ratio 0.07387 (Ka = 0.0276, Ks = 0.374)

Genome Location

Sequence Coding sequence

Length: 2373 bp    Location: 3997924..4155130   Strand: +
Raw sequence   
>XM_004840691.1
ATGGATTCCTGGTTCATTCTTGTTCTGCTTGGCAGTGGTCTGATACGTGTGAGTGCCAACAATACTACCACAGTTTCACCTTCGTTAGGATCAATTAAAGCATCAACAACAGAATCAGTTAGAGAAGAGAACAAAACTTCAAATCCAACCTCTTCAGTAACTTCTCTTTCTCTGGCACCAACATTCAGCCCAAATTCAACTCTGGGACCCACCTATGTAACCACTGTCAATTATTCATACTCGGACAATGGGACCATCAGAACAATAAGCACTAATTCTGTAGGCACTGCCATTTCACCAAATGGGACGTGGCTTCCAGACAACCAGTCCACAGATGCCAGAACACAACCCTGGCAGGGGATTTCCAGCACTACAGGAACCACTCCAAAAAACTTCACTTCTTCAGATGAGACTTCAATTATTGCAGTGATAGTAGCCTTGTCCTCTCTGCTAGTGATTGTTTTTATCATCATAGTTCTGTACATGTTAAGGTTTAAGAAATACAAGCAAGCTGGTAGCCATTCCAATTCTTTCCGCTTATCAAACGGCCGCGCTGAGGATGTGGAGCCCCAGAGCGTGCCACTTCTGGCCAGGTCCCCAAGCACTAACAGAAAATACCCACCCCTGCCCGTGGACAAGCTGGAAGAAGAGATTAACCGGAGAATGGCTGACGACAATAAGCTCTTCAGAGAAGAATTCAATGCTCTCCCTGCTTGCCCTATCCAGGCCACCTGTGAGGCTGCCTCTAAGGAAGAAAATAAAGAAAAAAATCGATACGTAAACATCTTGCCCTATGACCACTCTAGAGTACACCTGACACCTGTTGAAGGGGTTCCAGATTCTGATTACATCAATGCTTCATTCATTAATGGCTACCAAGAAAAGAACAAATTTATTGCTGCACAAGGACCAAAAGAAGAAACAGTGAATGATTTCTGGAGGATGATCTGGGAACAAAACACAGCCACCATTGTCATGGTGACCAATCTGAAGGAGAGAAAGGAGTGTAAGTGCGCCCAGTACTGGCCAGACCAAGGCTGCTGGACCTACGGGAATATCCGTGTGTCCGTAGAGGATGTGACTGTCCTGGTGGACTACACAGTACGAAAGTTCTGTATTCAGCAGGTGGGCGATGTGACCAACAGAAAACCACAGCGCCTCATCACTCAGTTCCACTTTACCAGCTGGCCAGACTTTGGGGTACCTTTCACCCCAATTGGCATGCTCAAGTTCCTCAAGAAGGTGAAGGCCTGTAACCCTCAGTATGCAGGAGCCATTGTGGTCCACTGCAGTGCAGGTGTCGGGCGTACAGGTACCTTTGTCGTCATTGATGCCATGCTGGACATGATGCACACAGAACGGAAAGTGGATGTGTATGGCTTTGTGAGCCGTATCCGGGCCCAGCGCTGCCAGATGGTTCAAACAGATATGCAGTATGTCTTCATATACCAAGCCCTTCTGGAGCATTATCTCTATGGGGATACAGAACTGGAAGTGACCTCTCTAGAAACCCACCTGCAGAAAATTTATAACAAAATCCCAGGGACCAGCAACAATGGATTAGAGGAGGAATTTAAGAAGTTAACATCAATCAAAATCCAGAATGACAAGATGCGGACTGGAAACCTTCCGGCCAACATGAAGAAGAACCGTGTTTTACAGATCATTCCATATGAATTCAACAGAGTGATCATTCCGGTTAAGCGAGGCGAGGAGAACACAGACTATGTGAATGCATCCTTCATTGATGGTTACCGGCAGAAGGACTCATACATCGCCAGCCAGGGCCCTCTTCTGCACACAATTGAGGACTTCTGGCGAATGATCTGGGAGTGGAAATCCTGTTCCATTGTGATGCTAACGGAACTGGAGGAAAGAGGCCAGGAGAAGTGTGCCCAGTACTGGCCATCTGATGGTCTGGTGTCCTATGGAGACATCACAGTGGAGCTGAAGAAAGAGGAGGAATGTGAGAGCTACACTGTCCGAGACCTCCTGGTCACCAACACCAGAGAAAACAAGAGCCGGCAGATCCGACAATTCCACTTCCATGGCTGGCCTGAAGTGGGCATCCCCAGTGATGGGAAGGGCATGATCAGCATCATTGCAGCCGTGCAGAAGCAGCAGCAGCAGTCTGGGAACCACCCTATCACTGTGCATTGCAGCGCTGGAGCAGGACGGACCGGGACCTTCTGTGCCTTGAGCACAGTCCTGGAGCGCGTGAAGGCAGAGGGAATTTTGGACGTCTTCCAGACTGTCAAGAGTCTTCGACTGCAGAGGCCACACATGGTCCAGACACTGGAACAGTACGAGTTCTGCTACAAGGTGGTGCAGGAGTACATTGACGCCTTCTCAGACTATGCCAACTTCAAGTGA

Related Sequences

XP_004840748.1 Protein

Ptpra PREDICTED: receptor-type tyrosine-protein phosphatase alpha isoform X2 [Heterocephalus glaber]

Length: 790 aa      View alignments
>XP_004840748.1
MDSWFILVLLGSGLIRVSANNTTTVSPSLGSIKASTTESVREENKTSNPTSSVTSLSLAPTFSPNSTLGPTYVTTVNYSYSDNGTIRTISTNSVGTAISPNGTWLPDNQSTDARTQPWQGISSTTGTTPKNFTSSDETSIIAVIVALSSLLVIVFIIIVLYMLRFKKYKQAGSHSNSFRLSNGRAEDVEPQSVPLLARSPSTNRKYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNIRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHTERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYGDTELEVTSLETHLQKIYNKIPGTSNNGLEEEFKKLTSIKIQNDKMRTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMISIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDAFSDYANFK