Sequence details NCBI ID: XM_004840679.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vps16
Gene Name vacuolar protein sorting 16 homolog (S. cerevisiae), transcript variant X1
Entrez Gene ID 101712558

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VPS16 ENSCPOG00000003602 (Guinea pig)

Gene Details

vacuolar protein sorting 16 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003253, Guinea pig)

Protein Percentage 97.38%
CDS Percentage 94.28%
Ka/Ks Ratio 0.07197 (Ka = 0.0132, Ks = 0.1832)

VPS16 ENSG00000215305 (Human)

Gene Details

vacuolar protein sorting 16 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000369810, Human)

Protein Percentage 96.19%
CDS Percentage 91.02%
Ka/Ks Ratio 0.05244 (Ka = 0.019, Ks = 0.3629)

Vps16 ENSMUSG00000027411 (Mouse)

Gene Details

vacuolar protein sorting 16 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000028900, Mouse)

Protein Percentage 94.76%
CDS Percentage 88.52%
Ka/Ks Ratio 0.05332 (Ka = 0.0261, Ks = 0.4899)

Vps16 ENSRNOG00000021222 (Rat)

Gene Details

vacuolar protein sorting 16 homolog (S. cerevisiae) (Vps16), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028821, Rat)

Protein Percentage 94.52%
CDS Percentage 88.04%
Ka/Ks Ratio 0.05376 (Ka = 0.0275, Ks = 0.511)

Genome Location

Sequence Coding sequence

Length: 2520 bp    Location: 3959677..3991191   Strand: +
Raw sequence   
>XM_004840679.1
ATGGACTGCTACACAGCGAACTGGAACCCACTCGGAGACTCTGCCTTTTACCGGAAGTATGAACTATACAGCATGGACTGGGACCTGAAAGAGGAACTCAGGGACTGCCTGGTGGCTGCTGCACCCTATGGGGGCCCCATTGCGCTGCTGAGGAACCCCTGGCGAAAGGAGAAAGCTGCCAGTGTACGGCCCATGCTTGAGATCTATTCTGCTTCTGGTGTGCCCCTGGTCAGCCTGCTGTGGAAGAGTGGACCTGTGGTGTCCATGGGCTGGTCAGCTGAGGAAGAGCTGCTCTGCGTGCAGGAAGATGGTGCAGTACTGGTTTATGGGCTTCATGGTGACTTCCGGAGACACTTTAGCATGGGCAATGAGGTGCTGCAGAACCGGGTTCTAGATGCCCGGATCTTTCACACTGAGCTTGGTTCTGGGGTGGCCATCCTCACAGGGGCCCATCGCTTTACCCTCAGTGCCAATGTAGGCGACCTCAAACTCCGCCGGATGCCAGAGGTGCCAGGCCTGCAAAGTGCACCCTCATGCTGGACTACATTGTTCCAGGAACGAGTGGCACACATTCTTCTGGCCGTGGGACCTGATCTTTACCTCTTGGATCACGCAACCTGCTCTGTAGTGACACCCCCTGGACTACCTCCAGGAGTGACTAGCTTCCTGCAGATGGCTGTCTCCTTTACCTATCGACACCTAGCACTCTTCACAGACACGGGCTACATCTGGATGGGGACAGCATCATTTACGGACAAGCTGTGTGAGTTCAACTGCAACATCCGAGCACCCCCGAAGCAAATGGTCTGGTGCACCCGACCTCGAAGCAAGGAGAGGGCTGTCGTGGTGGCCTGGGAGAGGCGGCTAATGGTGGTGGGCAATGCACCTGAGAGCATCCAGTTTGTGCTAGATGAGGACTCCTACCTGGTTCCTGAGCTCGATGGGGTCCGCATCTTCTCCCGAAACACCCATGAGTTTCTGCATGAGGTTCCAGTGACCAGTGAGGAGATCTTCAAAATTGCCTCAATGGCCCCTGGAGCACTGCTATTGGAAGCCCAGAAGGAGTACGAGAAAGAGAGCCAGAAGGCAGATGAGTACCTACGAGAGATCCAGGAGCTGGGGCAGCTAACCCAGGCAGTACAGCAGTGCATTGAGGCTGCAGGACATGAGCACAGGCCAGACATGCAGAAGAGTCTGCTCAGGGCGGCCTCCTTTGGAAAGTGTTTCCTTGACAGATTTCCACCCGACAGCTTTGTACGCATGTGTCAGGACCTGCGTGTGCTCAATGCCATTCGGGACTACCACATTGGGATTCCCCTCACCTATAGCCAATACAAGCAACTTACTATCCAGGTGCTACTGGACAGGCTTGTGTTGCGGAGACTTTACCCCCTCGCTATCCAGATATGCGAGTACTTGCGACTTCCAGAAGTACAGGGCATCAGCAGGATCCTGGCTCACTGGGCCTGCTACAAGGTACAACAGAAGGATGTGTCAGATGAGGATGTTGCACGAGCCATTAATCAGAAGCTGGGGGACACTCCTGGTGTCTCATATTCAGACATTGCTGCACGGGCCTATGGCTGTGGCCGCACAGAGCTGGCCATCAAGCTCCTGGAGTATGAACCACGCTCAGGGGAGCAGGTACCCCTTCTCCTCAAGATGAAAAGGAGCAAACTGGCACTGAGCAAGGCCATTGAGAGTGGGGACACTGACTTGGTATTCACAGTGTTACTGCACCTGAAGAATGAGCTGAACCGAGGAGACTTTTTCATGACCCTCCGGAACCAGCCCATGGCCCTGAGTTTGTACCGACAGTTTTGTAAGCATCAGGAGCTAGAGACACTGAAGGACCTCTACAATCAAGATGACAATCACCAGGAGTTGGGCAGCTTCCACCTCCGAGCCAGCTATGCTGCAGAAGAGCGCATCGAAGGGCGAGTAGCAGCTCTGCAGATAGCAGCTGATGCCTTCTATAAGGCCAAGAACGAGTTTGCAGCCAAGGCCACAGAGGATCAAATGCGCCTCCTCCGGCTACAGCGGCGTCTAGAAGATGAGCTGGGAGGCCAGTTCCTAGACCTGTCTCTACATGACACAGTCACCACCCTCATTGTTGGTGGCCATAACAAGCGTGCGGAACAGCTGTCACGTGACTTCCGCATCCCTGACAAGAGGCTCTGGTGGCTGAAGCTCACTGCCCTGGCAGATTTGGAAGACTGGGAGGAGCTGGAGAAGTTTTCCAAGAGCAAAAAATCACCCATCGGTTACCTGCCCTTTGTGGAGATCTGCATGAAACAGCACAACAAATATGAGGCCAAGAAGTATGCATCCCGTGTGGGTCCTGAGCAGAAGGTCAAAGCTTTGCTTCTTGTTGGAGACGTGGCTCAGGCTGCAGATGTGGCCATCGAGCACCGGAGTGAGGCTGAGTTGAGTCTTGTGTTGTCCCACTGCACTGGAGCCTCTGATGGGGCCACAGCTGACAAAATTCAGCGGGCCAGAACACAAGCCCAGAAGAAGTGA

Related Sequences

XP_004840736.1 Protein

Vps16 PREDICTED: vacuolar protein sorting-associated protein 16 homolog isoform X1 [Heterocephalus glaber]

Length: 839 aa      View alignments
>XP_004840736.1
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAASVRPMLEIYSASGVPLVSLLWKSGPVVSMGWSAEEELLCVQEDGAVLVYGLHGDFRRHFSMGNEVLQNRVLDARIFHTELGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCWTTLFQERVAHILLAVGPDLYLLDHATCSVVTPPGLPPGVTSFLQMAVSFTYRHLALFTDTGYIWMGTASFTDKLCEFNCNIRAPPKQMVWCTRPRSKERAVVVAWERRLMVVGNAPESIQFVLDEDSYLVPELDGVRIFSRNTHEFLHEVPVTSEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLTQAVQQCIEAAGHEHRPDMQKSLLRAASFGKCFLDRFPPDSFVRMCQDLRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGISRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQELGSFHLRASYAAEERIEGRVAALQIAADAFYKAKNEFAAKATEDQMRLLRLQRRLEDELGGQFLDLSLHDTVTTLIVGGHNKRAEQLSRDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEHRSEAELSLVLSHCTGASDGATADKIQRARTQAQKK