Sequence details NCBI ID: XM_004840656.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sdcbp2
Gene Name syndecan binding protein (syntenin) 2
Entrez Gene ID 101702481

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SDCBP2 ENSCPOG00000021957 (Guinea pig)

Gene Details

syndecan binding protein (syntenin) 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020604, Guinea pig)

Protein Percentage 86.3%
CDS Percentage 88.47%
Ka/Ks Ratio 0.21621 (Ka = 0.0726, Ks = 0.3358)

SDCBP2 ENSG00000125775 (Human)

Gene Details

syndecan binding protein (syntenin) 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000354013, Human)

Protein Percentage 82.19%
CDS Percentage 85.16%
Ka/Ks Ratio 0.18266 (Ka = 0.0953, Ks = 0.5219)

Sdcbp2 ENSMUSG00000027456 (Mouse)

Gene Details

syndecan binding protein (syntenin) 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000028950, Mouse)

Protein Percentage 81.16%
CDS Percentage 82.19%
Ka/Ks Ratio 0.15251 (Ka = 0.1062, Ks = 0.6962)

Sdcbp2 ENSRNOG00000009528 (Rat)

Gene Details

syndecan binding protein (syntenin) 2 (Sdcbp2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000012690, Rat)

Protein Percentage 81.16%
CDS Percentage 81.74%
Ka/Ks Ratio 0.14474 (Ka = 0.1091, Ks = 0.7536)

Genome Location

Sequence Coding sequence

Length: 879 bp    Location: 2635362..2624776   Strand: -
Raw sequence   
>XM_004840656.1
ATGTCTGCTCTGTACCCATCTCTGGAGGACCTGAAGGTGGACCAAGTCATCCAGGCCCAAACCAGAGCCTCGCCCAAGATGCTCACCTTGCCTATGCAGGAGGCAACTGGCTCCCCACCTTCAGTTCTGTACCCAAACTTGGGAGAACTGGAGAGCTACATGGGTCTTTCCCTCTCCAGCCAACAAATCCAGCAGAGCCTGCTTCAGCTCCCAGAGGGTGACAATACGGCGGTCTCTGGGCCCTGGCCCGGCCAGCTGGTGGCGCCGGTGTCCGGGAACAACCTGGGCATGCGGCGTGCGGAGATCAAGTCTGGAGTGCGGGAGATCCACCTGTGCAAAGATGAGCGTGGCAAGACTGGGCTGCGGCTGCGGGCCATAGACAAGGGGCTCTTCGTGCAGCTGGTCCAGGCCAACACCCCTGCATCCCTGGTGGGGCTGCGCTTTGGGGACCAGATCCTGCAGATTGACGGGTGTGACTGTGCTGGGTGGAGCACAGACAAAGCCCACCGGGTGCTGAAGAAGGCTTCAGTAGAGAAGATTGTCATGGTTGTTCGGGACAGGCCATTCCAGCGGACAGTCACGATGCACAAGGATGGCTTGGGCCATGTTGGCTTCTTCATCAAGAAGGGGAAGGTTGTGTCTGTGGTCAAAGGGAGCTCTGCGGCCCGCAACGGGCTCCTCACCAGCCACTGCATATGCGAGGTGAACGGGCAGAATGTCATTGGACTGAAGGACAAAGCAATCATGGAGATACTGGCAACAGCTGGAGATGTCATCACCCTGACCATCATTCCCGCTGTGATCTACGAGCACATGGTGAAAAAGTTGTCCCCGATGCTGCTCCACCACACCATGGACCACTCTATCCCAGATGCCTGA

Related Sequences

XP_004840713.1 Protein

Sdcbp2 PREDICTED: syntenin-2 [Heterocephalus glaber]

Length: 292 aa      View alignments
>XP_004840713.1
MSALYPSLEDLKVDQVIQAQTRASPKMLTLPMQEATGSPPSVLYPNLGELESYMGLSLSSQQIQQSLLQLPEGDNTAVSGPWPGQLVAPVSGNNLGMRRAEIKSGVREIHLCKDERGKTGLRLRAIDKGLFVQLVQANTPASLVGLRFGDQILQIDGCDCAGWSTDKAHRVLKKASVEKIVMVVRDRPFQRTVTMHKDGLGHVGFFIKKGKVVSVVKGSSAARNGLLTSHCICEVNGQNVIGLKDKAIMEILATAGDVITLTIIPAVIYEHMVKKLSPMLLHHTMDHSIPDA