Details from NCBI annotation

Gene Symbol Snph
Gene Name syntaphilin, transcript variant X4
Entrez Gene ID 101700718

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SNPH ENSCPOG00000027267 (Guinea pig)

Gene Details

syntaphilin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018182, Guinea pig)

Protein Percentage 94.99%
CDS Percentage 92.02%
Ka/Ks Ratio 0.08057 (Ka = 0.025, Ks = 0.3109)

SNPH ENSG00000101298 (Human)

Gene Details

syntaphilin

External Links

Gene Match (Ensembl Protein ID: ENSP00000371297, Human)

Protein Percentage 91.65%
CDS Percentage 90.02%
Ka/Ks Ratio 0.09262 (Ka = 0.0416, Ks = 0.4494)

Snph ENSMUSG00000027457 (Mouse)

Gene Details

syntaphilin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000105501, Mouse)

Protein Percentage 83.11%
CDS Percentage 80.39%
Ka/Ks Ratio 0.12464 (Ka = 0.1136, Ks = 0.9113)

SNPH ENSRNOG00000009588 (Rat)

Gene Details

Syntaphilin

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000012727, Rat)

Protein Percentage 88.84%
CDS Percentage 85.33%
Ka/Ks Ratio 0.0785 (Ka = 0.0619, Ks = 0.7888)

Genome Location

Sequence Coding sequence

Length: 1623 bp    Location: 2609590..2622540   Strand: +
>XM_004840652.1
ATGCCTGGCAGCGGCCCCAGTGAGAGGATGACATGGCCCGGCCCGGCCTTCCCTGCTGGCCCCCCAACCTGCCCTCTTTCTTCAGCCCCAGGGACACCACCCATTCCACCCCTTACTCGGACCCGCAGCCTCATGGCCATGTCCCTGCCAGGGAGCAGACGGGCCTCTGCTGGATCCCGCAGGCGCACCTCTCCACCCGTGAGCGTGCGGGATGCCTATGGTACCTCTTCCCTCAGCAGTAGCAGCAACTCAGGCTCCTGCAAGGGCAGCGACAGCAGCCCCACACCCAGGCGCTCCATGAAGTACACACTGTGCAGTGACAACCATGGCATCAAGCCCCCCACCCCGGAGCAGTACCTGACCCCCCTGCAGCAGAAAGAGGTGTGCATCCGGCACCTGAAGGCGCGGCTGAAGGACACACAGGACCGGCTCCAGGACCGGGACACAGAGATCGATGACCTGAAGACACAGCTATCACGCATGCAGGAGGACTGGATTGAGGAGGAATGCCACCGTGTGGAGGCTCAGCTAGCCCTGAAGGAAGCCCGCAAGGAAATCAAACAGCTCAAACAGGTCATTGACACTGTCAAAAACAACCTGATTGACAAAGACAAGGGGCTGCAGAAATACTTTGTGGACATCAACATCCAGAACAAGAAGCTAGAGACGCTGCTGCACAGCATGGAGGTGGCCCAGAATGGCATGGCCAAGGAGGAGGGCACTGGGGAGTCGGCTGGTGGTTCCCCTGCCCGCTCCCTCACCCGCAGTTCCACTTATACCAAGCTGAGTGACCCAGCTGTCTGCGGTGACCACCAGCCTGGTGATCCCTCCGCCTCTGCTGAAGATGGAACCGACAGTGGCTTTGTGGCTGCTGATGACACACTAAGCCGGACTGACGCTCTAGAGGCCAGCAGCCTGCTGTCATCAGGGGTGGACTGTGGCCCTGAGGAGGCCTCGCTGCACAGCTCCTTCAGCCTGGGTGCCCGCTTCCCTGCCAGTAACACCTATGAGAAGCTTCTGTGTGCCACAGAAGCTGGTGTGCAGGCCAGCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCACTACCAACCCGACCTGGACACCATCCTGGAGAGAGTGACACAGGCCCAGGGCTGTGGGACAGTCCCTGAGGACAGGCACCCAGAGTCAGATTCCCACCCCCCAGGGCCCAGAGACCCCAACTCAGCAGTGGTGGTGACAATGGGTGATGAGCTTGAGGTCCCGCAGGCCATCACCCATGGGCCCACTGTACACCGGCCTGGAGCCAACCCCAACCCTGGTCTGTCGGTGAGTGTGGTATGCCCTGTGGAGGAGGAGGAGGAGGAGGTGGCCACGCCTGCGGCTACAGCTGAAAAGGAGCCCAAGAGCTACTGGAGTCGCCACTACATCGTGGATCTTCTGGCTGTGGTGGTGCCAGCCATGCCCACAGTAGCCTGGCTTTGCCGCTCCCAGCGACGCCAGGGCCAGCCCATCTACAACATCAGCTCCCTGCTGCGGGGCTGCTGCACTGTGGCCTTGCACTCCATCCGCAGGATGAGCTGCCGCTCTCTAGCCCACTCAGGGCCCAGTTCAGCAAGCAGTAGCTCCCAGCTCTGA

Related Sequences

XP_004840709.1 Protein

Snph PREDICTED: syntaphilin isoform X4 [Heterocephalus glaber]

Length: 540 aa      View alignments
>XP_004840709.1
MPGSGPSERMTWPGPAFPAGPPTCPLSSAPGTPPIPPLTRTRSLMAMSLPGSRRASAGSRRRTSPPVSVRDAYGTSSLSSSSNSGSCKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIKQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKLETLLHSMEVAQNGMAKEEGTGESAGGSPARSLTRSSTYTKLSDPAVCGDHQPGDPSASAEDGTDSGFVAADDTLSRTDALEASSLLSSGVDCGPEEASLHSSFSLGARFPASNTYEKLLCATEAGVQASCMQERAIQTDFVHYQPDLDTILERVTQAQGCGTVPEDRHPESDSHPPGPRDPNSAVVVTMGDELEVPQAITHGPTVHRPGANPNPGLSVSVVCPVEEEEEEVATPAATAEKEPKSYWSRHYIVDLLAVVVPAMPTVAWLCRSQRRQGQPIYNISSLLRGCCTVALHSIRRMSCRSLAHSGPSSASSSSQL