Sequence details NCBI ID: XM_004840646.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Psmf1
Gene Name proteasome (prosome, macropain) inhibitor subunit 1 (PI31)
Entrez Gene ID 101699766

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PSMF1 ENSCPOG00000013762 (Guinea pig)

Gene Details

proteasome (prosome, macropain) inhibitor subunit 1 (PI31)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012399, Guinea pig)

Protein Percentage 94.46%
CDS Percentage 94.34%
Ka/Ks Ratio 0.20546 (Ka = 0.0289, Ks = 0.1409)

PSMF1 ENSG00000125818 (Human)

Gene Details

proteasome (prosome, macropain) inhibitor subunit 1 (PI31)

External Links

Gene Match (Ensembl Protein ID: ENSP00000338039, Human)

Protein Percentage 88.93%
CDS Percentage 88.81%
Ka/Ks Ratio 0.19433 (Ka = 0.061, Ks = 0.3139)

Psmf1 ENSMUSG00000032869 (Mouse)

Gene Details

proteasome (prosome, macropain) inhibitor subunit 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000041184, Mouse)

Protein Percentage 83.39%
CDS Percentage 84.99%
Ka/Ks Ratio 0.23122 (Ka = 0.0964, Ks = 0.4167)

Psmf1 ENSRNOG00000009640 (Rat)

Gene Details

proteasome (prosome, macropain) inhibitor subunit 1 (Psmf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000038926, Rat)

Protein Percentage 84.87%
CDS Percentage 85.49%
Ka/Ks Ratio 0.19831 (Ka = 0.0847, Ks = 0.4273)

Genome Location

Sequence Coding sequence

Length: 837 bp    Location: 2402785..2443071   Strand: +
Raw sequence   
>XM_004840646.1
ATGTCGAAGCTGCGGGTGTTCATGGCGGGCTTGGAGGTACTTTTCGCTTCGGCGGCGCCGGTGATCACCTGCGCGCAGGACGCGCTCGTCTGCTTCCTGCACTGGGAGGTGGTGACACACGGCTACTGTGGCTTGGGTGCCGGCGATCAGCCAGGTCCCAGTGATAAGAAGTCAGAACTGCTACCAGCTGGGTGGAGCGATAATAAAGACCTGTATGTCCTCCGTTATGAGTCCAAGGATGGGTCCAGAAAGCTCCTGATGAAAGCTGTCCCTGTGGAGAACAGCATGATCATCAATGTGCTGGAATATGGCTCACAGCAAGTGACAGACTTGACTCTGAACTTAGATGATTTTATCAGTGCAGAAGACCTGGGTGACTTCCACAGGACCTACAAGAACAGCAAGGAGCTTCGTTCTCGCATCCTATCTGGAATCATCACACCCATCCATGAGCAGTGGGACAAGGCCAGTGAAAGCAGTGCCCAACGTGAGTTCCCCCCTGCCACCGCCAGAGAAGTAGACCCTCTCCGGATTCCTCCACACCATCCGCACACCAGCCGGCAGCCTCCCTGGTCTGATCCCCTGGGCCCCTTTGCTGTCGGGGGAGAAGACCTAGACCCCTTCGGGTTCCGGAGAGGTGGCATGATTGTGGACCCCTTGAGATCTGGCTTCCCAAGAGCACTTATTGACCCATCTTCAGGTCTCCCAAACCAGCTTCCTCCAGGTGCAGTTCCCCCAGGAGCTCGCTTTGACCCCTTTGGACCCATTGGGACCAGCCCCTCTGGGCCCAACCCAGACCATCTCCCTCCGCCGGGTTTCGATGACATGTACCTGTGA

Related Sequences

XP_004840703.1 Protein

Psmf1 PREDICTED: proteasome inhibitor PI31 subunit [Heterocephalus glaber]

Length: 278 aa      View alignments
>XP_004840703.1
MSKLRVFMAGLEVLFASAAPVITCAQDALVCFLHWEVVTHGYCGLGAGDQPGPSDKKSELLPAGWSDNKDLYVLRYESKDGSRKLLMKAVPVENSMIINVLEYGSQQVTDLTLNLDDFISAEDLGDFHRTYKNSKELRSRILSGIITPIHEQWDKASESSAQREFPPATAREVDPLRIPPHHPHTSRQPPWSDPLGPFAVGGEDLDPFGFRRGGMIVDPLRSGFPRALIDPSSGLPNQLPPGAVPPGARFDPFGPIGTSPSGPNPDHLPPPGFDDMYL