Sequence details NCBI ID: XM_004836348.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Simc1
Gene Name SUMO-interacting motifs containing 1, transcript variant X2
Entrez Gene ID 101716531

Database interlinks

Part of NW_004624733.1 (Scaffold)

For more information consult the page for NW_004624733.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SIMC1 ENSCPOG00000023337 (Guinea pig)

Gene Details

SUMO-interacting motifs containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016001, Guinea pig)

Protein Percentage 83.31%
CDS Percentage 87.27%
Ka/Ks Ratio 0.49681 (Ka = 0.1115, Ks = 0.2243)

SIMC1 ENSG00000170085 (Human)

Gene Details

SUMO-interacting motifs containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000342075, Human)

Protein Percentage 91.71%
CDS Percentage 89.51%
Ka/Ks Ratio 0.13498 (Ka = 0.0465, Ks = 0.3446)

Simc1 ENSMUSG00000043183 (Mouse)

Gene Details

SUMO-interacting motifs containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000113676, Mouse)

Protein Percentage 77.12%
CDS Percentage 81.26%
Ka/Ks Ratio 0.38447 (Ka = 0.158, Ks = 0.411)

Simc1 ENSRNOG00000016932 (Rat)

Gene Details

Protein LOC100361684

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060156, Rat)

Protein Percentage 76.28%
CDS Percentage 80.81%
Ka/Ks Ratio 0.36685 (Ka = 0.1598, Ks = 0.4357)

Genome Location

Sequence Coding sequence

Length: 2586 bp    Location: 13869094..13806382   Strand: -
Raw sequence   
>XM_004836348.1
ATGGAGGACTTCATCGTGATCTCGGACGACAGCGGCTCGGAGAGCTCGGGGGGGACCCGCTCGGGCCGGGTGCGGAGGCTCCGCCGGGCCCTGTCGCGGACCCCCAGCGCGCTGCCCCGCCGGACCGTGGATTTCATTGACTTAACTACAGAAACTAGACCAAGAGCAAAGGATCGCAATGGGCTCTGTGTGATTGACCTGACAGGAAGTGAAGACGAAAATAGACCTATTGACACTCTTGATTTGACTTTAGAATCTGTCATTCCCTCTCAGAAAGAGCCAGGCAGTCTGCAGACATGTGCCATCCTTTCTAGCAAAGAGGTAATGGAAAGAGGAAACAGAAGCTCTCGACCTGTACCACAAAGAATCATTAACAGCAATCCTGTAGATTTGGATCTGTTGGAAGAAACTACTTTTGAAGGTCCTCAGCCCCCTACATCCATCAGTCAGGACTCTGTTTATCCAGAAGAGCCAAATTGTAGCTCAGCTACATTCAAAGGTGACCTCAGCTTCCTGCCAAGCACACAGCTATCTTCAGATATTAGCTCCCTTTCCCCTTCAAGCAATAATGGTAGCAGCAGCAATCCAAGGGCACCCTTGCCATGCTCACTACGAGCCTTGCCATCCCCACTGAGAGCCTCACCATGTCCACCACGAGCCTCCTCATGTCCACCGCGAGCCTTGTCATGCCCATCACAAACCACTCAGTGCCAGCTACAAGCTTTGCCTCACCCACCTCAAGAAATGTCATGCCCTTCTCAAGATGTGCCATGCACTCAGAATATGCCAGTCCTGTCTCAAGACTCATCATGGCATCCTCATTGCCCACTGAGCCCACCTCAAGGCCCTCTGGACCTACCTCAGGATGTACCAGGCCCACCTCAAAACCTGTCATATCCACAAGATGTGGCATATCAGCAAAACTTACGGTCACTACGAAACCTGTCACAGTCACTAGGAGATGTACCACAGCCATTGGAAAACATGCCACAGTTACCTGGTAACATAACACAGTCACCAGGCAATATGTCACAGTCACCCAGAGGTGTGCTACTTTTGCCAGATGTACTACACTCACCTGAAAACATGGTACACTCATCAAGAGACATGTCATGTTCACGGGGAGACTTGCCTCGCTTACCACAAGACAGGCCTCACTCTCCTCAGAATGATGTACAGAATTGTGACAGTCCTATGGATATCTCAACTCCATCCTCTACAAGTTGCTCCCCTGGCCCACCATCTCCACAGTCTGAAACTTCCTTAGAGAAAGTTCCTTGGCTTTCTGTCACAGAAACATCAGCCAGAAAAGAGATGTCATTGTCAGAGCCTGCCTGTGCCAGGTCTGTCCAGGTACAAACACAAACATTGCAAGGCGGGCTGTGCAACAGACCCTGCCTACATAGAATGAAGTACTTCTTGCGGCCTCCAGTACATCATCTCTTCTTCCAGACACTAATACCAGATAAAGATGCACGAGAGAGCAAGACTCAAAAATTAGAACCCATACCTCATCGAAGACTAAGAATGGTGACAAACACCATTGAAGAAAACTTTCCTCTAGGGACTGTGCAGTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCACCCAGAGAAATTGTGGCTCACATCATCCAGAAAATCCTGCTCAGTGACTCTGAGACGGTGGATGTCCTCAAGGATGCCTACATGCTTCTCATGAAAATTCAACAGCTACATCCGGCCAATGCCAAGACAGTGGAGTGGGACTGGAAGCTGCTCACCTATGTCATGGAGGAAGAGGGTCAAACTCTGCCTGGGCGAGTCCTTTTCCTGCGTTATGTAGTACAGACCCTGGAAGATGACTTCCAGCACACCCTGAGGAGACAACGGCACCACCTGCAGCAATCCATTGCTAACACTGTATTGTCCTGTGACAAGCAGCCCCACAATGTCAGAGATGTTATCAAGTGGCTGGTCAAAGCAGTAACTGAAGATAGATTAACTCCGTACCCAAGTGGGAACCAAACCTCTTCCAGAAGAGGAATTTCAAAAGCCAGCAGTGGCCATCCTGCTCCCCAGCCTAACCTAACCAAGAACACCAATCAGCTGGAGATGTTCTTTACAACCATGGAAAGCCACCTACTGCGCTGCAAGGTGTTAGAAATCATATTCCTCCACAGCTGCGAGACGCCCACCCGCCTGCCCCTGTGTCTGGCCCAGGCTCTCTATTTCCTGAATAATTCCACCTCACTACTCAAGTGTCAGTCTGATAAAACCCAGTGGCAGACTTGGGATGAGCTGGTGGAGCATCTGCAGTTTCTGTTGTCCAGTTATCAACATGTTTTAAGAGAGCACCTACGCAGTTCAGTGATCGATCGAAAAGATTTGATCATCAAAAAGATTAAGCCCAAGCCCCAGCAAGGAGATGACATCACAGTGATGGACGTGGAGAAGCACATCGAGGCCTTCCGTAACCGCCTGATCCAGATGCTAGGGGAGCCTCTGGTCCCCCAGCTCCAAAATAAAGTGCACTTGTTGAAGCTCCTGCTCTTCTACGCTGCAGATCTGAACCCTGACGCAGAGCCATCATCAAAGCACTAG

Related Sequences

XP_004836405.1 Protein

Simc1 PREDICTED: SUMO-interacting motif-containing protein 1 isoform X2 [Heterocephalus glaber]

Length: 861 aa      View alignments
>XP_004836405.1
MEDFIVISDDSGSESSGGTRSGRVRRLRRALSRTPSALPRRTVDFIDLTTETRPRAKDRNGLCVIDLTGSEDENRPIDTLDLTLESVIPSQKEPGSLQTCAILSSKEVMERGNRSSRPVPQRIINSNPVDLDLLEETTFEGPQPPTSISQDSVYPEEPNCSSATFKGDLSFLPSTQLSSDISSLSPSSNNGSSSNPRAPLPCSLRALPSPLRASPCPPRASSCPPRALSCPSQTTQCQLQALPHPPQEMSCPSQDVPCTQNMPVLSQDSSWHPHCPLSPPQGPLDLPQDVPGPPQNLSYPQDVAYQQNLRSLRNLSQSLGDVPQPLENMPQLPGNITQSPGNMSQSPRGVLLLPDVLHSPENMVHSSRDMSCSRGDLPRLPQDRPHSPQNDVQNCDSPMDISTPSSTSCSPGPPSPQSETSLEKVPWLSVTETSARKEMSLSEPACARSVQVQTQTLQGGLCNRPCLHRMKYFLRPPVHHLFFQTLIPDKDARESKTQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSDSETVDVLKDAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQHTLRRQRHHLQQSIANTVLSCDKQPHNVRDVIKWLVKAVTEDRLTPYPSGNQTSSRRGISKASSGHPAPQPNLTKNTNQLEMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLCLAQALYFLNNSTSLLKCQSDKTQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKKIKPKPQQGDDITVMDVEKHIEAFRNRLIQMLGEPLVPQLQNKVHLLKLLLFYAADLNPDAEPSSKH