Sequence details NCBI ID: XM_004835157.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trpc1
Gene Name transient receptor potential cation channel, subfamily C, member 1
Entrez Gene ID 101696653

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRPC1 ENSCPOG00000003198 (Guinea pig)

Gene Details

transient receptor potential cation channel, subfamily C, member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002897, Guinea pig)

Protein Percentage 96.06%
CDS Percentage 94.18%
Ka/Ks Ratio 0.13777 (Ka = 0.0267, Ks = 0.1938)

TRPC1 ENSG00000144935 (Human)

Gene Details

transient receptor potential cation channel, subfamily C, member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000419313, Human)

Protein Percentage 96.05%
CDS Percentage 93.22%
Ka/Ks Ratio 0.11766 (Ka = 0.0272, Ks = 0.2312)

Trpc1 ENSMUSG00000032839 (Mouse)

Gene Details

transient receptor potential cation channel, subfamily C, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000057640, Mouse)

Protein Percentage 96.13%
CDS Percentage 88.72%
Ka/Ks Ratio 0.0533 (Ka = 0.0265, Ks = 0.4977)

Trpc1 ENSRNOG00000009601 (Rat)

Gene Details

transient receptor potential cation channel, subfamily C, member 1 (Trpc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013144, Rat)

Protein Percentage 95.55%
CDS Percentage 88.18%
Ka/Ks Ratio 0.05592 (Ka = 0.0299, Ks = 0.5348)

Genome Location

Sequence Coding sequence

Length: 2238 bp    Location: 19307272..19374259   Strand: +
Raw sequence   
>XM_004835157.1
ATGGGAACGACTCATCCCTTTTCCAGCCCTGGGACAGGGCTGGGGTCGGGGTCGGGGCCCATGGGGGCTCCTCCCCCGTCTCCTGGCCTGCCCCCTTCCTGGGCCGCGATGATGGCGGCCCTGTACCCGAGCACTGACCTCTCGGGCGTCTCCTCCTCCTCCCTGCCTTCCTCCCCATCCTCCTCTTCGTCGCCGAACGAAGTGATGGCGCTGAAGGATGTGCGGGAGGTGAAGGAGGAGAACACCCTGAATGAGAAGCTTTTCTTGCTGGCGTGCGACAAGGGTGACTATTATATGGTTAAAAAGATTTTGGAGGAAAACAGTTCAGGTGACTTGAACATAAATTGTGTAGATGTGCTTGGGAGAAATGCCATTACCATAACTATTGAAAACGAAAACTTGGATATACTTCAGCTTCTTTTGGACTACGGTTGTCAGTCTGCAGATGCACTTTTGGTGGCAATCGACTCTGAAGTAGTGGGAGCTGTTGATATACTACTTAATCATCGAGCAAAACGATCATCAAGACCAACTATAGTAAAACTAATGGAACGAATTCAAAATCCTGAGTATTCAACAACTATGGATGTTGCACCTGTCATTTTAGCTGCTCATCGTAACAACTATGAAATTCTTACAATGCTCTTAAAACAGGATGTGTCTCTACCCAAGCCCCATGCAGTTGGCTGTGAATGCACATTGTGTTCTGCAAAAAACAAAAAGGACAGCCTCCGACATTCCAGGTTTCGTCTTGATATATATCGATGTTTGGCCAGTCCAGCTCTAATAATGTTAACAGAGGAGGATCCAATTCTGAGAGCATTTGAACTTAGTGCTGATTTAAAAGAACTAAGCCTTGTGGAGGTGGAATTCAGGAATGATTATGAAGAACTAGCCCGTCAATGCAAAATGTTTGCTAAAGACTTGCTTGCCCAAGCCCGGAATTCACGTGAATTGGAAGTTATCCTAAACCATACATCTAGTGATGAACCTCTTGACAAACGGGGACTACTAGAGGAAAGAATGAATTTAAGTCGTCTAAAACTTGCTATCAAATATAACCAAAAGGAGATGGAACATTTATTGGGGAAAAAATTTGAACATAAGAATTTGGATCAGTATAGAAACAAGTTTACAAATCAGCAGTGTACCTGGATGATTTGGTCAGACATTAAAAGACTCTGGTATGAAGGGTTGGAAGACTTTTTAGAAGAATCTCGTAATCAACTCAGTTTTGTCATGAATTCCCTTTATTTGGCAACCTTTGCTCTCAAAGTGGTTGCTCACAACAAGTTTCATGATTTTGCTGATCGGAAGGACTGGGATGCATTCCATCCTACACTTGTGGCAGAAGGGCTTTTTGCATTTGCAAATGTTCTGAGTTATCTTCGGCTCTTTTTTATGTATACAACCAGCTCTATCTTGGGTCCCTTACAGATTTCAATGGGACAGATGTTACAAGATTTTGGAAAATTCCTTGGGATGTTCCTTCTTGTATTGTTTTCTTTCACAATTGGACTGACACAACTCTATGATAAAGGCTATACACCAAAAGAACAGAAGGACTGTGTAGGCATCTTTTGTGAACAGCAAAGCAATGATACCTTCCACTCGTTCATTGGCACTTGCTTTGCTTTGTTCTGGTATATTTTCTCCTTGGCACATGTGGCAATCTTTGTCACAAGATTTAGCTACGGAGAAGAATTGCAATCCTTTGTTGGAGCTGTTATTGTTGGTACCTACAATGTTGTAGTTGTCATCGTGCTTACCAAGCTACTGGTAGCAATGCTTCATAAAAGCTTTCAGTTAATAGCAAATCATGAAGACAAAGAATGGAAATTTGCTCGTGCAAAGTTGTGGCTTAGCTACTTTGATGACAAATGTACATTACCCCCACCTTTCAACATCATTCCTTCACCAAAGACTATTTGCTATATGATTAGTAGCCTCAGTAAGTGGATTTGCTCTCATACTTCAAAAGGCAAGGTCAAACGGCAGAACAGTTTAAAGGAATGGAGAAATTTGAAACAAAAGAGAGATGAAAACTACCAAAAAGTGATGTGCTGCTTAGTGCATCGTTATTTGACTTCCATGAGACAGAAGATGCAAAGTACAGATCAGGCAACTGTGGAAAATCTAAATGAACTACGCCAAGATTTGTCAAAATTCCGAAATGAAATAAGGGATTTGCTTGGCTTTCGGACTTCTAAATATGCTATGTTTTACCCAAGAAATTAA

Related Sequences

XP_004835214.1 Protein

Trpc1 PREDICTED: short transient receptor potential channel 1 [Heterocephalus glaber]

Length: 745 aa      View alignments
>XP_004835214.1
MGTTHPFSSPGTGLGSGSGPMGAPPPSPGLPPSWAAMMAALYPSTDLSGVSSSSLPSSPSSSSSPNEVMALKDVREVKEENTLNEKLFLLACDKGDYYMVKKILEENSSGDLNINCVDVLGRNAITITIENENLDILQLLLDYGCQSADALLVAIDSEVVGAVDILLNHRAKRSSRPTIVKLMERIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQDVSLPKPHAVGCECTLCSAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFELSADLKELSLVEVEFRNDYEELARQCKMFAKDLLAQARNSRELEVILNHTSSDEPLDKRGLLEERMNLSRLKLAIKYNQKEMEHLLGKKFEHKNLDQYRNKFTNQQCTWMIWSDIKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKVVAHNKFHDFADRKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQDFGKFLGMFLLVLFSFTIGLTQLYDKGYTPKEQKDCVGIFCEQQSNDTFHSFIGTCFALFWYIFSLAHVAIFVTRFSYGEELQSFVGAVIVGTYNVVVVIVLTKLLVAMLHKSFQLIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYMISSLSKWICSHTSKGKVKRQNSLKEWRNLKQKRDENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNELRQDLSKFRNEIRDLLGFRTSKYAMFYPRN