Sequence details NCBI ID: XM_004835099.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sec22c
Gene Name SEC22 vesicle trafficking protein homolog C (S. cerevisiae), transcript variant X3
Entrez Gene ID 101717219

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEC22C ENSCPOG00000022406 (Guinea pig)

Gene Details

SEC22 vesicle trafficking protein homolog C (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018233, Guinea pig)

Protein Percentage 85.48%
CDS Percentage 86.91%
Ka/Ks Ratio 0.16036 (Ka = 0.0821, Ks = 0.5119)

SEC22C ENSG00000093183 (Human)

Gene Details

SEC22 vesicle trafficking protein homolog C (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000264454, Human)

Protein Percentage 82.51%
CDS Percentage 79.76%
Ka/Ks Ratio 0.0992 (Ka = 0.1019, Ks = 1.0274)

Sec22c ENSMUSG00000061536 (Mouse)

Gene Details

SEC22 vesicle trafficking protein homolog C (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000077628, Mouse)

Protein Percentage 81.19%
CDS Percentage 80.42%
Ka/Ks Ratio 0.09619 (Ka = 0.1055, Ks = 1.0963)

Sec22c ENSRNOG00000047873 (Rat)

Gene Details

SEC22 vesicle trafficking protein homolog C (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000063993, Rat)

Protein Percentage 70.63%
CDS Percentage 72.83%
Ka/Ks Ratio 0.13716 (Ka = 0.2078, Ks = 1.5151)

Genome Location

Sequence Coding sequence

Length: 912 bp    Location: 77102859..77120863   Strand: +
Raw sequence   
>XM_004835099.1
ATGTCCATGATCTTCTTCGCTAGTGTGGTACGGGTGAGGGACGGACTGCCGCTCTCGGCCTCCACTGACTTCTACCACGCCCCGGCCTTCCTGGAGTGCAGGCGGCGCCTCAAGGCCTTGGCCCTGCAGCTGGCCAGGCACCCGGGCCGGGGCTCCGCAGAGAGCTGGGACTTCCGCATACACTTTTCTTCTGCCCGGGATGTGGCCTGCATGGCTATCTGCTCCCGCCAGTGCCCAGCAGCCATGGCCTTCTGTTTCCTGGAGACCCTGTGGTGGGAGTTCACAGCGTCCTTCGACACCACCCGCATCGGCCTCGCCTCCAGGCCCTACGCCTTCCTCGAGTTTGACAGCACCATTCAGAAAATGAAGTGGCATTTTAACCACGTGAGCCCCTTGCAGATGAAGAGCAGCTTGGAGAAAGTTCAGGAGGAGCTTGACTTCCAGCCCCCTGTAGTTCTCTCCCTGGAGGACACGGACAGGGCCAACGGCCTGGCGAACGGGCACACACCCGTGCATGCAGAGCCCGCTCCGCGTTTCCGCATGGAGCCCGTGAGCGCCCTGGGTGTCCTGTCCCTTGTCCTCAACATTATGTGTGCCGCTGTCAACCTCGTCCGCGGAGTTCACCTCGCAGAGCACTCCTTACAGGTTGCCCAGGAGGAAGTTGGGAACATCCTGGCCTTTCTCATTCCTTTTGTAGCCTGCATTTTCCAGTGCTACCTGTACCTGTTCTACAGTTCAGCCCGCACGGCGAAGGTGCTGCTGCTGCTGCTCTTCATCTGCCTGGGCAACATGTACCTGCACGGCCTGCGCAACCTGTGGCAGATCCTCTTCCACATCGGTGTGGCGTGTCTGTCCTCACACCAGATCCTCATGCGGCAGCTGCAGGAGACACAGTCGGACTGCAGCGTGTGA

Related Sequences

XP_004835156.1 Protein

Sec22c PREDICTED: vesicle-trafficking protein SEC22c isoform X3 [Heterocephalus glaber]

Length: 303 aa      View alignments
>XP_004835156.1
MSMIFFASVVRVRDGLPLSASTDFYHAPAFLECRRRLKALALQLARHPGRGSAESWDFRIHFSSARDVACMAICSRQCPAAMAFCFLETLWWEFTASFDTTRIGLASRPYAFLEFDSTIQKMKWHFNHVSPLQMKSSLEKVQEELDFQPPVVLSLEDTDRANGLANGHTPVHAEPAPRFRMEPVSALGVLSLVLNIMCAAVNLVRGVHLAEHSLQVAQEEVGNILAFLIPFVACIFQCYLYLFYSSARTAKVLLLLLFICLGNMYLHGLRNLWQILFHIGVACLSSHQILMRQLQETQSDCSV