Sequence details NCBI ID: XM_004835048.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdcp1
Gene Name CUB domain containing protein 1, transcript variant X1
Entrez Gene ID 101700801

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDCP1 ENSCPOG00000019509 (Guinea pig)

Gene Details

CUB domain containing protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019358, Guinea pig)

Protein Percentage 81.98%
CDS Percentage 85.6%
Ka/Ks Ratio 0.12304 (Ka = 0.094, Ks = 0.764)

CDCP1 ENSG00000163814 (Human)

Gene Details

CUB domain containing protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000296129, Human)

Protein Percentage 75.79%
CDS Percentage 78.45%
Ka/Ks Ratio 0.0946 (Ka = 0.1307, Ks = 1.3813)

Cdcp1 ENSMUSG00000035498 (Mouse)

Gene Details

CUB domain containing protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000042057, Mouse)

Protein Percentage 71.52%
CDS Percentage 75.07%
Ka/Ks Ratio 0.10101 (Ka = 0.1625, Ks = 1.6087)

Cdcp1 ENSRNOG00000004743 (Rat)

Gene Details

CUB domain containing protein 1 (Cdcp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006272, Rat)

Protein Percentage 72.0%
CDS Percentage 75.47%
Ka/Ks Ratio 0.10008 (Ka = 0.1594, Ks = 1.5925)

Genome Location

Sequence Coding sequence

Length: 2481 bp    Location: 75490312..75518159   Strand: +
Raw sequence   
>XM_004835048.1
ATGGGCGGCCTGGACTGCAGCGTGGCCGTGGCGCTGCTGGGCGCGCTGGTGCTGGGCGCGGCACGCGGGGCAGGGGCTGTGGAGATCACTGTGCCCCGGGACAGTGACATCACCATCCTCGTAAAGCAGGGGGCCCCATCCCTGAGACCCTGCCACCTCTTCACCGCCAAGCGGCATGTGACCATGCTGACTGTCAAGCCTGGGGAGAGGACAAGCTTCAGCTTCACCTGCCAGGACCCAGAGAAGCACTTCGTCCTGGAGATCCAGAAGAACATCGACTGCACGGCCAGCCCATGTCCGCTGGGTGAGGTCCCGCTGCAGCCGCCCGCCGCCGCGCTGCCCGCCCTCAACAGGACCTTCGTGTGGGACGTGCGCACCCGCAAGAGCACCGGCCTGGAGCTGCGCTTCTCCGGGCCCCGCCTCAGGCAGGTCGGCCCGGGGGACAGCTGTCCAGACGGCGTCACCTACACCATCAGCAGCCGCGTGGATGCCGCCGTGGTCAAGATTGGCACCTTCTGTGGCAAGGGCACGGTGTCGCGCATCAAGCTGCAGGAGGGGCTGAAGGTGGCCCTGCACCTCCCCTGGTTCCAGGCCAGAAACGAGTCCGGCTTCAGCATCACCAACCACACGGCCATAAAACGCCTGTGCATCGTGGAGTCTGTGTTTGAGGATGAGGGCTCGGCGACCCTGCTGTCGGCCAACTACCCGGCTGGCTTCCCCGAGGATGAGCTCATGACGTGGCAGTTCATGGTGCCCGCACACCTGCGGGCCAGCGTGTCCTTCCTGGACTTCAGCACGTCCAACTGTGAGCGCAAGGAGGAGCGTGTGGAGTACCACATCCCCGGCTCGGCCACCAACCCCGAGGTGTTCCGGCTGGACGACCCGCAGCCGGGCAACATGGCCGGGAACTTCAACCTGTCCCTGCAGGGCTGCGACCAGGATCCCCAGAGCCCAGGCGCCCTGCGGCTGCGCTTCCAGGTGCTGGTGCAGCACCCCCAGACCGAGAGCAATAAAACCTACGTGGTCGACTTGAGCCAGGAGCGAACCCTGTCGCTGAGCATCGAGCCGCGGCCCAAGCCGAGCCCCAGGTTCAAGGCCGGCTGCTTCGTGTGTCTGGAGTCCCGGACCTGCAGCCCCAAGGTCACACTGGCGCCTGGCTCCAAATACAAGGTCTCCTTCCTCTGCGACGACCTCACGCGCCTGTGGGCCATTGCTGAGAAGACCCTAAGCTGCAGCGACCACCGCTACTGCCAAAGGAAGGCCTTCCCGCTGCAGGTGCCCGACGACGTGCTGCAGCTGCCCGTGCAGCTGCGCGACTTCTCCTGGAAGCTGCTGGTGCCCAGGGACAGGCTCAGCCTGGTGCTGACGCCGGCGCGGAAGCTGCAGCAGCACACGCACGAGCGGCCCTGCAACGCCAGCTTCAGCTACGTGGTGGCCAGCGCTGCCCCAGACCTGTACTTCGGCTCCTTCTGCACCGGCGGCTCCATCAAGCAGGTGCTGTTGCGGCAGAACAGTTCTGTGACACTCCGCACCTACGCGCCCGGCTTCCACAGCGAGGTCCCGGGCCAGGGCCTCACCGTGTCCTTCGTGCCCTACTTCAAAGAGGAAGCCATCTTCACGGTGACCCCAGACACGAAGAGCAAGCTCTACCTGAGGACCCCGAACTGGGACCGCGGCCTGCCGGCCCTCTCCTCCGTGTCCTGGAACATCACCGTGCCCAGCGGCCAGGAGGCCTGCTTGACCTTCTCCAAGGAGCGCACTGGAGTGGTCTGCCAGTCCGGGCGCGCGTTCATGATCATCCAGGAGCAGCGCACACAGATGGAGGAGATCTTCAGCCTGGAGGACGACACGCTCCCCAAGCCCAGCTTCCACCGCCACAGCTTCTGGGTCAACATCTCCAACTGCAGCCCCACCAGTGGCAAGCAGCTGGACCTGCTCTTCTGGGTGACTCTGACCCCAAGGACCTTGGATGTGACCGTCATCACTGCTGTGGTGGGAGGCGGAGTCTCACTGCTCTTCGCCCTCGGCCTCATCATTTGCTGTGTGAAGAAGAAGAAGAAGGTGAACAAGGGCCCCGCCGTGGGCATCTACAATGGCAATATCAACACCCAGATGCCACTGCAGCCCAAGAAGTTCCAGAAAGGACGAAAGGACAACGACTCCCACGTGTATGCGGTCATCGAAGACACCATGGTGTACGGGCACCTGCTGCAGGGCTCCGGTGGGTCCTTCCTGCAGCCGGAGGTGGATGCCTACCGGCCCTTCCAGGGTGCCATGGGCGACCGCCCGCCCAGCCCACCGCCCACCTGCTCCAGGGTGCCCACTGCCAAGCTGGCCGAGGAGAAGCCGCCCCCTTGCACCTCGCTGGAGCCTGAGACCGAGCCCTACACCTTCTCCCACCCCAGCCAGGCGGCTGGGAGCAACCGGGCCACACACGTGCCCCTGCTGGACCCACAGGAGCCGGGGCTGCCGGCAGAGTAG

Related Sequences

XP_004835105.1 Protein

Cdcp1 PREDICTED: CUB domain-containing protein 1 isoform X1 [Heterocephalus glaber]

Length: 826 aa      View alignments
>XP_004835105.1
MGGLDCSVAVALLGALVLGAARGAGAVEITVPRDSDITILVKQGAPSLRPCHLFTAKRHVTMLTVKPGERTSFSFTCQDPEKHFVLEIQKNIDCTASPCPLGEVPLQPPAAALPALNRTFVWDVRTRKSTGLELRFSGPRLRQVGPGDSCPDGVTYTISSRVDAAVVKIGTFCGKGTVSRIKLQEGLKVALHLPWFQARNESGFSITNHTAIKRLCIVESVFEDEGSATLLSANYPAGFPEDELMTWQFMVPAHLRASVSFLDFSTSNCERKEERVEYHIPGSATNPEVFRLDDPQPGNMAGNFNLSLQGCDQDPQSPGALRLRFQVLVQHPQTESNKTYVVDLSQERTLSLSIEPRPKPSPRFKAGCFVCLESRTCSPKVTLAPGSKYKVSFLCDDLTRLWAIAEKTLSCSDHRYCQRKAFPLQVPDDVLQLPVQLRDFSWKLLVPRDRLSLVLTPARKLQQHTHERPCNASFSYVVASAAPDLYFGSFCTGGSIKQVLLRQNSSVTLRTYAPGFHSEVPGQGLTVSFVPYFKEEAIFTVTPDTKSKLYLRTPNWDRGLPALSSVSWNITVPSGQEACLTFSKERTGVVCQSGRAFMIIQEQRTQMEEIFSLEDDTLPKPSFHRHSFWVNISNCSPTSGKQLDLLFWVTLTPRTLDVTVITAVVGGGVSLLFALGLIICCVKKKKKVNKGPAVGIYNGNINTQMPLQPKKFQKGRKDNDSHVYAVIEDTMVYGHLLQGSGGSFLQPEVDAYRPFQGAMGDRPPSPPPTCSRVPTAKLAEEKPPPCTSLEPETEPYTFSHPSQAAGSNRATHVPLLDPQEPGLPAE